RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FCRL6Q6DN72 434 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 KCNRGQ8N5I3 272 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 CYYR1Q96J86 154 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 CLCC1Q96S66 551 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 MRM2Q9UI43 246 aaKnown RBP13.05□□□□□ -0.32
SDC1-201ENST00000254351 TMED7Q9Y3B3 224 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 MPDZO75970 2070 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 LYPD3O95274 346 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 DIO1P49895 249 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 RAB28P51157 221 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 CXADRP78310 365 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 FABP9Q0Z7S8 132 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 ARHGAP11BQ3KRB8 267 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 MOGAT2Q3SYC2 334 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 DMRTC1Q5HYR2 192 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 METRNLQ641Q3 311 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 SLC35F3Q8IY50 421 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 SYS1Q8N2H4 156 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 OR4A4PQ8NGN8 299 aa13.05□□□□□ -0.32
SDC1-201ENST00000254351 ZNF514Q96K75 400 aaPredicted RBP13.05□□□□□ -0.32
SDC1-201ENST00000254351 NAA11Q9BSU3 229 aaPredicted RBP13.05□□□□□ -0.32
SDC1-201ENST00000254351 C17orf113A0A1B0GUU1 675 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 ZNF208O43345 1280 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 SULT1B1O43704 296 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CXCL10P02778 98 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 SERPINA5P05154 406 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 DBIP07108 87 aaKnown RBP13.04□□□□□ -0.32
SDC1-201ENST00000254351 NQO2P16083 231 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 AGTR1P30556 359 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 SDHAP31040 664 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 ADAM8P78325 824 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 PPP1R1AQ13522 171 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 KIRREL2Q6UWL6 708 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 ENPP7Q6UWV6 458 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 FAM122BQ7Z309 247 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 ARMC10Q8N2F6 343 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CHST4Q8NCG5 386 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 NPEPL1Q8NDH3 523 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 OR10G6Q8NH81 332 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 FAM3DQ96BQ1 224 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 EPHX3Q9H6B9 360 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 SFXN1Q9H9B4 322 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CHRNA9Q9UGM1 479 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 DPP7Q9UHL4 492 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 LAMP5Q9UJQ1 280 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 MED19A0JLT2 244 aaPredicted RBP13.04□□□□□ -0.32
SDC1-201ENST00000254351 CT62P0C5K7 136 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 EPCAMP16422 314 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 IL13RA1P78552 427 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CDK3Q00526 305 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 UNQ9370/PRO34162Q6UXP9 181 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 RNF113BQ8IZP6 322 aaKnown RBP13.04□□□□□ -0.32
SDC1-201ENST00000254351 RAB42Q8N4Z0 105 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 JAGN1Q8N5M9 183 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 OR2L3Q8NG85 312 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 OR1J4Q8NGS1 313 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 ZNF285Q96NJ3 590 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 AMELYQ99218 206 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CMKLR1Q99788 373 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 RPS10P5Q9NQ39 176 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 MSRAQ9UJ68 235 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CSAG2Q9Y5P2 127 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 LAMA1P25391 3075 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 FBXO24O75426 580 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 SNAPINO95295 136 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CYB5AP00167 134 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CPT2P23786 658 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 LSSP48449 732 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 FHL1Q13642 323 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 ALKBH1Q13686 389 aaKnown RBP13.04□□□□□ -0.32
SDC1-201ENST00000254351 RTN4RL2Q86UN3 420 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 FAM174AQ8TBP5 190 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CCDC107Q8WV48 283 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 LAT2Q9GZY6 243 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 LMAN2LQ9H0V9 348 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 CST11Q9H112 138 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 ZNF275Q9NSD4 429 aaPredicted RBP13.04□□□□□ -0.32
SDC1-201ENST00000254351 UQCC1Q9NVA1 299 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 GPR34Q9UPC5 381 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 SLC22A7Q9Y694 548 aa13.04□□□□□ -0.32
SDC1-201ENST00000254351 KIAA0100Q14667 2235 aaKnown RBP13.03□□□□□ -0.32
SDC1-201ENST00000254351 ZNF749O43361 778 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 CALCBP10092 127 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 NME2P22392 152 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 CD80P33681 288 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 TRA2BP62995 288 aaKnown RBP13.03□□□□□ -0.32
SDC1-201ENST00000254351 SPOCK1Q08629 439 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 RUNX2Q13950 521 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 HABP2Q14520 560 aaPredicted RBP13.03□□□□□ -0.32
SDC1-201ENST00000254351 EIF2S3LQ2VIR3 472 aaKnown RBP13.03□□□□□ -0.32
SDC1-201ENST00000254351 TMEM35AQ53FP2 167 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 ACOT7LQ6ZUV0 252 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 JAZF1Q86VZ6 243 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 NRSN1Q8IZ57 195 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 CLEC1AQ8NC01 280 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 TMEM52Q8NDY8 209 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 SEMA6DQ8NFY4 1073 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 CCDC74AQ96AQ1 378 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 ZNF558Q96NG5 402 aa13.03□□□□□ -0.32
SDC1-201ENST00000254351 KXD1Q9BQD3 176 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms