RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ARL3P36405 182 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 TP53I3Q53FA7 332 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 OR5M10Q6IEU7 315 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 GOT1L1Q8NHS2 421 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF558Q96NG5 402 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PRSS16Q9NQE7 514 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MANBALQ9NQG1 85 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PDLIM7Q9NR12 457 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MRPL15Q9P015 296 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 OR5K4A6NMS3 321 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MT-ND6P03923 174 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 CRYBB2P43320 205 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 RAD52P43351 418 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ERVK-16P61578 105 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MZT1Q08AG7 82 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PLA1AQ53H76 456 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 Q6ZSR9 355 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF765Q7L2R6 523 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 OR9A4Q8NGU2 314 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ISG20Q96AZ6 181 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 WDR89Q96FK6 387 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ABHD14BQ96IU4 210 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 EPHX3Q9H6B9 360 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 EHFQ9NZC4 300 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MYO5AQ9Y4I1 1855 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MYH7P12883 1935 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SEMG1P04279 462 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ACP5P13686 325 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 FOLR2P14207 255 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 FCGR2CP31995 323 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SLC6A9P48067 706 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 TBPL1P62380 186 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MRPS34P82930 218 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 IL13RA2Q14627 380 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 UBE2V2Q15819 145 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ASB11Q8WXH4 323 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PGAM5Q96HS1 289 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MFRPQ9BY79 579 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MYBPHLA2RUH7 354 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 CRYBA1P05813 215 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 KITLGP21583 273 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 FKBP2P26885 142 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 BCL6P41182 706 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 GATMP50440 423 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 FOXA1P55317 472 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PPIAP62937 165 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 BEX3Q00994 111 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 RTL8BQ17RB0 113 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 WBP2NLQ6ICG8 309 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF2Q9BSG1 426 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 C19orf25Q9UFG5 118 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 TOGARAM1Q9Y4F4 1720 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SSC5DA1L4H1 1573 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 XKRY2A2RUG3 117 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 LAMB4A4D0S4 1761 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MEIS3P1A6NDR6 274 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 DCTN6O00399 190 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 CYR61O00622 381 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 RRP8O43159 456 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ASGR2P07307 311 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 HOXD4P09016 255 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PGA3P0DJD8 388 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SULT1A1P50225 295 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MRPL49Q13405 166 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PIN1Q13526 163 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 LBX2Q6XYB7 198 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 DPPA4Q7L190 304 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 RCBTB1Q8NDN9 531 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 RPL10LQ96L21 214 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 TAC3Q9UHF0 121 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 GPR52Q9Y2T5 361 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 WSB1Q9Y6I7 421 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ANKRD20A5PA0PJZ0 165 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 SFTPCP11686 197 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 POLR2IP36954 125 aaKnown RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 HLA-DRB3P79483 266 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PLGLB1Q02325 96 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF85Q03923 595 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 CDK5R1Q15078 307 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 EML3Q32P44 896 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 VRK2Q86Y07 508 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 PRSS58Q8IYP2 241 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 CPA6Q8N4T0 437 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 IFI44Q8TCB0 444 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 DGAT2Q96PD7 388 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 ATG101Q9BSB4 218 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 IKZF4Q9H2S9 585 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 AK3Q9UIJ7 227 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 DRGXA6NNA5 263 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 M0R1X1 148 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 GLCEO94923 617 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 GLSO94925 669 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 APOA2P02652 100 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 LINC00614P0C842 121 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 HAPLN1P10915 354 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-220ENST00000641603 CTSEP14091 401 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 AHRP35869 848 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 MALLQ13021 153 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 THEM4Q5T1C6 240 aa4.31□□□□□ -1.72
SCN1A-220ENST00000641603 OR2G6Q5TZ20 316 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms