RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CRHP06850 196 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 AK4P27144 223 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 KCNJ3P48549 501 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SSR4P51571 173 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CAV2P51636 162 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MAT1AQ00266 395 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 NFATC3Q12968 1075 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SIX1Q15475 284 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 PROX2Q3B8N5 592 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 LRRC73Q5JTD7 316 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 DESI1Q6ICB0 168 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR52E8Q6IFG1 317 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ZNF679Q8IYX0 411 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SLC24A4Q8NFF2 622 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 NLGN2Q8NFZ4 835 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR2T33Q8NG76 320 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR52E2Q8NGJ4 325 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR10K1Q8NGX5 313 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR56B4Q8NH76 319 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 LRRC15Q8TF66 581 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CELF1Q92879 486 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 ZNF442Q9H7R0 627 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TMED3Q9Y3Q3 217 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CCDC187A0A096LP49 1063 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 A0A1W2PN81 502 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TCRBV9S1A1TA0A576 114 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SGK494L7N484 410 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 NFKBIEO00221 500 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 PEX10O60683 326 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 DHRS3O75911 302 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 HPRP00739 348 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MT-ND4P03905 459 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CNR1P21554 472 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ITGB8P26012 769 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CHRNA7P36544 502 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SRPXP78539 464 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 GTF2BQ00403 316 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 RELAQ04206 551 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SLC14A1Q13336 389 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 LSAMPQ13449 338 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CCDC144NLQ6NUI1 221 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 FAM219AQ8IW50 185 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MAML2Q8IZL2 1156 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 ANKRD52Q8NB46 1076 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR56A3Q8NH54 315 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ZPLD1Q8TCW7 415 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 DYRK2Q92630 601 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SLC35G5Q96KT7 338 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SUSD3Q96L08 255 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 APOLD1Q96LR9 279 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SGK494Q96LW2 274 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CGREF1Q99674 301 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 RHOJQ9H4E5 214 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 UBE2ZQ9H832 354 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 LPAR2Q9HBW0 351 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 LIPT1Q9Y234 373 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ZNF716A6NP11 495 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ALOX12BO75342 701 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 C2P06681 752 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ADRB3P13945 408 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CSF2RAP15509 400 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CRHBPP24387 322 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CSKP41240 450 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ETV4P43268 484 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SRP9P49458 86 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 MNX1P50219 401 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 MRPS34P82930 218 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 NTRK3Q16288 839 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 WDR73Q6P4I2 378 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SLC35D2Q76EJ3 337 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 LACC1Q8IV20 430 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ZDHHC14Q8IZN3 488 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 GCNT2Q8N0V5 402 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR5D13Q8NGL4 314 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SLC13A3Q8WWT9 602 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TMBIM1Q969X1 311 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 FAM46BQ96A09 425 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SGCZQ96LD1 299 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 KREMEN1Q96MU8 473 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 EXTL2Q9UBQ6 330 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 IL19Q9UHD0 177 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 NAGKQ9UJ70 344 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 PAM16Q9Y3D7 125 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TANC1Q9C0D5 1861 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 A0A1B0GVT2 93 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 BLOC1S5-TXNDC5H3BN57 136 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 RPLP1P05386 114 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 TRAPPC2P0DI81 140 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TRAPPC2BP0DI82 140 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ELK1P19419 428 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TFEBP19484 476 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CD52P31358 61 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TCTAP57738 103 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 RACK1P63244 317 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 MEF2DQ14814 521 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TMEM183BQ1AE95 376 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 PLEKHS1Q5SXH7 462 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ZNF684Q5T5D7 378 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 RANBP10Q6VN20 620 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 LYG2Q86SG7 212 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms