RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 VASH1Q7L8A9 365 aaPredicted RBP15.06■□□□□ 0
CLN3-252ENST00000636907 TMEM251Q8N6I4 163 aa15.06■□□□□ 0
CLN3-252ENST00000636907 TMEM203Q969S6 136 aa15.06■□□□□ 0
CLN3-252ENST00000636907 TRMT61AQ96FX7 289 aaKnown RBP15.06■□□□□ 0
CLN3-252ENST00000636907 SCMH1Q96GD3 660 aa15.06■□□□□ 0
CLN3-252ENST00000636907 UCN2Q96RP3 112 aa15.06■□□□□ 0
CLN3-252ENST00000636907 DCSTAMPQ9H295 470 aa15.06■□□□□ 0
CLN3-252ENST00000636907 WDR76Q9H967 626 aa15.06■□□□□ 0
CLN3-252ENST00000636907 EXOSC4Q9NPD3 245 aaKnown RBP15.06■□□□□ 0
CLN3-252ENST00000636907 KLHL13Q9P2N7 655 aa15.06■□□□□ 0
CLN3-252ENST00000636907 RASD1Q9Y272 281 aa15.06■□□□□ 0
CLN3-252ENST00000636907 CELSR3Q9NYQ7 3312 aa15.06■□□□□ 0
CLN3-252ENST00000636907 E9PI62 339 aa15.05■□□□□ -0
CLN3-252ENST00000636907 POU3F2P20265 443 aaPredicted RBP15.05■□□□□ -0
CLN3-252ENST00000636907 CRABP1P29762 137 aa15.05■□□□□ -0
CLN3-252ENST00000636907 UGT2B10P36537 528 aa15.05■□□□□ -0
CLN3-252ENST00000636907 CD97P48960 835 aa15.05■□□□□ -0
CLN3-252ENST00000636907 AGFG1P52594 562 aaKnown RBP15.05■□□□□ -0
CLN3-252ENST00000636907 ACTA2P62736 377 aa15.05■□□□□ -0
CLN3-252ENST00000636907 ACTG2P63267 376 aa15.05■□□□□ -0
CLN3-252ENST00000636907 CDONQ4KMG0 1287 aa15.05■□□□□ -0
CLN3-252ENST00000636907 VASNQ6EMK4 673 aa15.05■□□□□ -0
CLN3-252ENST00000636907 USP43Q70EL4 1123 aa15.05■□□□□ -0
CLN3-252ENST00000636907 CDC20BQ86Y33 519 aa15.05■□□□□ -0
CLN3-252ENST00000636907 UBQLNLQ8IYU4 475 aa15.05■□□□□ -0
CLN3-252ENST00000636907 OR6N2Q8NGY6 317 aa15.05■□□□□ -0
CLN3-252ENST00000636907 DYNC2LI1Q8TCX1 351 aa15.05■□□□□ -0
CLN3-252ENST00000636907 ADGRG7Q96K78 797 aa15.05■□□□□ -0
CLN3-252ENST00000636907 INTS14Q96SY0 518 aa15.05■□□□□ -0
CLN3-252ENST00000636907 NAA11Q9BSU3 229 aaPredicted RBP15.05■□□□□ -0
CLN3-252ENST00000636907 MRPL13Q9BYD1 178 aaKnown RBP15.05■□□□□ -0
CLN3-252ENST00000636907 CCDC86Q9H6F5 360 aaKnown RBP15.05■□□□□ -0
CLN3-252ENST00000636907 TRIM36Q9NQ86 728 aa15.05■□□□□ -0
CLN3-252ENST00000636907 COA3Q9Y2R0 106 aaPredicted RBP15.05■□□□□ -0
CLN3-252ENST00000636907 KLHDC2Q9Y2U9 406 aa15.05■□□□□ -0
CLN3-252ENST00000636907 CSAG2Q9Y5P2 127 aa15.05■□□□□ -0
CLN3-252ENST00000636907 SIRT4Q9Y6E7 314 aaPredicted RBP15.05■□□□□ -0
CLN3-252ENST00000636907 ASPMQ8IZT6 3477 aa15.04■□□□□ -0
CLN3-252ENST00000636907 IGKV1D-43A0A0B4J1Z2 117 aa15.04■□□□□ -0
CLN3-252ENST00000636907 SLC35F4A4IF30 521 aa15.04■□□□□ -0
CLN3-252ENST00000636907 PRR32B1ATL7 298 aa15.04■□□□□ -0
CLN3-252ENST00000636907 ZNF670-ZNF695F2Z2N8 137 aa15.04■□□□□ -0
CLN3-252ENST00000636907 DNPH1O43598 174 aa15.04■□□□□ -0
CLN3-252ENST00000636907 HLA-DQA2P01906 255 aa15.04■□□□□ -0
CLN3-252ENST00000636907 PSKH1P11801 424 aa15.04■□□□□ -0
CLN3-252ENST00000636907 TNFSF10P50591 281 aa15.04■□□□□ -0
CLN3-252ENST00000636907 CLDN15P56746 228 aa15.04■□□□□ -0
CLN3-252ENST00000636907 RAC3P60763 192 aa15.04■□□□□ -0
CLN3-252ENST00000636907 HSF2Q03933 536 aa15.04■□□□□ -0
CLN3-252ENST00000636907 CAMK2DQ13557 499 aa15.04■□□□□ -0
CLN3-252ENST00000636907 HYAL4Q2M3T9 481 aa15.04■□□□□ -0
CLN3-252ENST00000636907 OTPQ5XKR4 325 aa15.04■□□□□ -0
CLN3-252ENST00000636907 HBMQ6B0K9 141 aa15.04■□□□□ -0
CLN3-252ENST00000636907 GDPGP1Q6ZNW5 385 aa15.04■□□□□ -0
CLN3-252ENST00000636907 ESPNLQ6ZVH7 1005 aa15.04■□□□□ -0
CLN3-252ENST00000636907 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.04■□□□□ -0
CLN3-252ENST00000636907 SYS1Q8N2H4 156 aa15.04■□□□□ -0
CLN3-252ENST00000636907 OR2V1Q8NHB1 315 aa15.04■□□□□ -0
CLN3-252ENST00000636907 SNX33Q8WV41 574 aa15.04■□□□□ -0
CLN3-252ENST00000636907 ADAD1Q96M93 576 aaKnown RBP15.04■□□□□ -0
CLN3-252ENST00000636907 TM9SF2Q99805 663 aa15.04■□□□□ -0
CLN3-252ENST00000636907 MFRPQ9BY79 579 aa15.04■□□□□ -0
CLN3-252ENST00000636907 MRPL22Q9NWU5 206 aaKnown RBP15.04■□□□□ -0
CLN3-252ENST00000636907 AKAP13Q12802 2813 aa15.03■□□□□ -0
CLN3-252ENST00000636907 LINC01387J3KSC0 135 aa15.03■□□□□ -0
CLN3-252ENST00000636907 KLK10O43240 276 aa15.03■□□□□ -0
CLN3-252ENST00000636907 TLX3O43711 291 aaPredicted RBP15.03■□□□□ -0
CLN3-252ENST00000636907 AHCYL1O43865 530 aa15.03■□□□□ -0
CLN3-252ENST00000636907 VAMP5O95183 116 aa15.03■□□□□ -0
CLN3-252ENST00000636907 ENPP1P22413 925 aa15.03■□□□□ -0
CLN3-252ENST00000636907 GABRA5P31644 462 aa15.03■□□□□ -0
CLN3-252ENST00000636907 BLVRAP53004 296 aa15.03■□□□□ -0
CLN3-252ENST00000636907 CARD18P57730 90 aa15.03■□□□□ -0
CLN3-252ENST00000636907 DNM1P34Q6PK57 102 aa15.03■□□□□ -0
CLN3-252ENST00000636907 IGFL2Q6UWQ7 119 aa15.03■□□□□ -0
CLN3-252ENST00000636907 DPY19L4Q7Z388 723 aa15.03■□□□□ -0
CLN3-252ENST00000636907 ZFP62Q8NB50 900 aaPredicted RBP15.03■□□□□ -0
CLN3-252ENST00000636907 TMEM178AQ8NBL3 297 aa15.03■□□□□ -0
CLN3-252ENST00000636907 KBTBD8Q8NFY9 601 aa15.03■□□□□ -0
CLN3-252ENST00000636907 OR6X1Q8NH79 312 aa15.03■□□□□ -0
CLN3-252ENST00000636907 SLC25A44Q96H78 314 aaPredicted RBP15.03■□□□□ -0
CLN3-252ENST00000636907 SCNM1Q9BWG6 230 aa15.03■□□□□ -0
CLN3-252ENST00000636907 SLC6A15Q9H2J7 730 aa15.03■□□□□ -0
CLN3-252ENST00000636907 SSR3Q9UNL2 185 aa15.03■□□□□ -0
CLN3-252ENST00000636907 GRIP1Q9Y3R0 1128 aa15.03■□□□□ -0
CLN3-252ENST00000636907 KCNMB2Q9Y691 235 aa15.03■□□□□ -0
CLN3-252ENST00000636907 KIAA1549Q9HCM3 1950 aa15.03■□□□□ -0
CLN3-252ENST00000636907 SMAD9O15198 467 aaKnown RBP15.03■□□□□ -0
CLN3-252ENST00000636907 CXCL13O43927 109 aa15.03■□□□□ -0
CLN3-252ENST00000636907 IGHG1P01857 330 aa15.03■□□□□ -0
CLN3-252ENST00000636907 PGA4P0DJD7 388 aa15.03■□□□□ -0
CLN3-252ENST00000636907 PGA3P0DJD8 388 aa15.03■□□□□ -0
CLN3-252ENST00000636907 PTGS2P35354 604 aa15.03■□□□□ -0
CLN3-252ENST00000636907 RPS27P42677 84 aaKnown RBP15.03■□□□□ -0
CLN3-252ENST00000636907 CAPZA2P47755 286 aa15.03■□□□□ -0
CLN3-252ENST00000636907 SERPINB10P48595 397 aa15.03■□□□□ -0
CLN3-252ENST00000636907 CLDN17P56750 224 aa15.03■□□□□ -0
CLN3-252ENST00000636907 CLRN1P58418 232 aa15.03■□□□□ -0
CLN3-252ENST00000636907 PPIAP62937 165 aaKnown RBP15.03■□□□□ -0
CLN3-252ENST00000636907 GPR50Q13585 617 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms