RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ZNF362Q5T0B9 420 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF787Q6DD87 383 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 CASP12Q6UXS9 341 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 TFAP2EQ6VUC0 442 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 WDFY1Q8IWB7 410 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 FAM81AQ8TBF8 368 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 UBE2FQ969M7 185 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 RASD2Q96D21 266 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 TXNDC15Q96J42 360 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 Q96M85 177 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 SLC38A2Q96QD8 506 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 ANKRD60Q9BZ19 345 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 NOSIPQ9Y314 301 aaKnown RBP13.24□□□□□ -0.29
TRIM28-207ENST00000597136 FBN2P35556 2912 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 TEX13CA0A0J9YWL9 993 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 GPR171O14626 319 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 SURF4O15260 269 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 DENRO43583 198 aaKnown RBP13.24□□□□□ -0.29
TRIM28-207ENST00000597136 SLC2A10O95528 541 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 BCL10O95999 233 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 HIST1H1CP16403 213 aaKnown RBP13.24□□□□□ -0.29
TRIM28-207ENST00000597136 OR3A2P47893 321 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 DAP3P51398 398 aaKnown RBP13.24□□□□□ -0.29
TRIM28-207ENST00000597136 EFNB1P98172 346 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 TSC22D1Q15714 1073 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 SNAPC1Q16533 368 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 ARMC4Q5T2S8 1044 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 ARIH2OSQ8N7S6 290 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 ACBD4Q8NC06 268 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF519Q8TB69 540 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 ASB10Q8WXI3 467 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 APOL4Q9BPW4 351 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 PRRG3Q9BZD7 231 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 Q9H521 79 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 CMC2Q9NRP2 79 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 IMPAD1Q9NX62 359 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 MED29Q9NX70 200 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 POLQO75417 2590 aa13.24□□□□□ -0.29
TRIM28-207ENST00000597136 PLCE1Q9P212 2302 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 PRKYO43930 277 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 MRPL33O75394 65 aaKnown RBP13.23□□□□□ -0.29
TRIM28-207ENST00000597136 MYF6P23409 242 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 ACVR1BP36896 505 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 PCYT1AP49585 367 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 FOXG1P55316 489 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-207ENST00000597136 BIDP55957 195 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 ISL1P61371 349 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 LGALS3BPQ08380 585 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 MELKQ14680 651 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 MEX3BQ6ZN04 569 aaKnown RBP13.23□□□□□ -0.29
TRIM28-207ENST00000597136 C22orf34Q6ZV56 151 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF100Q8IYN0 542 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 ENTHD1Q8IYW4 607 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 C8orf59Q8N0T1 100 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-207ENST00000597136 DEPDC4Q8N2C3 294 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 SETD9Q8NE22 299 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 OR4K13Q8NH42 304 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 IL4I1Q96RQ9 567 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF226Q9NYT6 803 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 EMC3Q9P0I2 261 aa13.23□□□□□ -0.29
TRIM28-207ENST00000597136 A6NIZ1 184 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 RIIAD1A6NNX1 92 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 IFNGP01579 166 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 CD79BP40259 229 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 CDKN2AP42771 156 aaKnown RBP13.22□□□□□ -0.29
TRIM28-207ENST00000597136 SELENOPP49908 381 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 CLDN17P56750 224 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 RAP1BP61224 184 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 RAP1AP62834 184 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 RUNX1T1Q06455 604 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.22□□□□□ -0.29
TRIM28-207ENST00000597136 KRR1Q13601 381 aaKnown RBP13.22□□□□□ -0.29
TRIM28-207ENST00000597136 MESTQ5EB52 335 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 FAM205BPQ63HN1 556 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 PTCHD4Q6ZW05 846 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 AAED1Q7RTV5 226 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 DMRTC2Q8IXT2 367 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-207ENST00000597136 GABRG1Q8N1C3 465 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 TCEANCQ8N8B7 351 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 OR52E2Q8NGJ4 325 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 OR8J1Q8NGP2 316 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 OR6X1Q8NH79 312 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 RHOXF1Q8NHV9 184 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 LINC01560Q8TB33 94 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 TRUB1Q8WWH5 349 aaKnown RBP13.22□□□□□ -0.29
TRIM28-207ENST00000597136 PLEKHA8Q96JA3 519 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 EMC6Q9BV81 110 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 KLHL21Q9UJP4 597 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 HSPE1-MOB4S4R3N1 261 aa13.22□□□□□ -0.29
TRIM28-207ENST00000597136 SLC35F4A4IF30 521 aa13.21□□□□□ -0.29
TRIM28-207ENST00000597136 XKRYO14609 159 aa13.21□□□□□ -0.29
TRIM28-207ENST00000597136 TLX2O43763 284 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-207ENST00000597136 ZNF432O94892 652 aa13.21□□□□□ -0.29
TRIM28-207ENST00000597136 ACADSP16219 412 aa13.21□□□□□ -0.29
TRIM28-207ENST00000597136 GABRB1P18505 474 aa13.21□□□□□ -0.29
TRIM28-207ENST00000597136 SNRPGP62308 76 aaKnown RBP13.21□□□□□ -0.29
TRIM28-207ENST00000597136 IL5RAQ01344 420 aa13.21□□□□□ -0.29
TRIM28-207ENST00000597136 TSPO2Q5TGU0 170 aa13.21□□□□□ -0.29
TRIM28-207ENST00000597136 STAC2Q6ZMT1 411 aa13.21□□□□□ -0.29
TRIM28-207ENST00000597136 BEND4Q6ZU67 534 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms