RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ZNF446Q9NWS9 450 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 P2RX2Q9UBL9 471 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 KLHL21Q9UJP4 597 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 FBXL3Q9UKT7 428 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 POFUT2Q9Y2G5 429 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 DSPPQ9NZW4 1301 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 A0A0G2JPF8 293 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 CLDN24A6NM45 220 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 A8MVM7 634 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 HNRNPCL2B2RXH8 293 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 HNRNPCL3B7ZW38 293 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 M0R3G1 203 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 HNRNPCL1O60812 293 aaKnown RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 NGFP01138 241 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 PRB2P02812 416 aaPredicted RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 LCKP06239 509 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 DBIP07108 87 aaKnown RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 HNRNPCL4P0DMR1 293 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 OR12D1P0DN82 309 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 RPS4Y1P22090 263 aaKnown RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 RBMXP38159 391 aaKnown RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 GIPRP48546 466 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 CRISP3P54108 245 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 RAB1AP62820 205 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 KLF17Q5JT82 389 aaPredicted RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 ASPHD2Q6ICH7 369 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 TYW3Q6IPR3 259 aaKnown RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 FIP1L1Q6UN15 594 aaKnown RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 ZNF813Q6ZN06 617 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 JAZF1Q86VZ6 243 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 PEX5LQ8IYB4 626 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 KDM8Q8N371 416 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 CADM2Q8N3J6 435 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 KLHL36Q8N4N3 616 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 MRAPQ8TCY5 172 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 EGLN1Q9GZT9 426 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 RASSF4Q9H2L5 321 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 OR51B6Q9H340 312 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 DENND2DQ9H6A0 471 aaPredicted RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 CACYBPQ9HB71 228 aaKnown RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 BCL2L10Q9HD36 194 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 MMP26Q9NRE1 261 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 NKIRAS2Q9NYR9 191 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 LEF1Q9UJU2 399 aaPredicted RBP9.4□□□□□ -0.9
VPS53-207ENST00000570510 RCE1Q9Y256 329 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 IFT52Q9Y366 437 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 RNF114Q9Y508 228 aa9.4□□□□□ -0.9
VPS53-207ENST00000570510 EVPLLA8MZ36 301 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 AHSA1O95433 338 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 CLPTM1O96005 669 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 IGHMP01871 453 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 SBK2P0C263 348 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 FAM157BP0CG42 384 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 VSIG8P0DPA2 414 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 ETS2P15036 469 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 IL7RP16871 459 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 ZNF14P17017 642 aaPredicted RBP9.39□□□□□ -0.91
VPS53-207ENST00000570510 HOXB9P17482 250 aaPredicted RBP9.39□□□□□ -0.91
VPS53-207ENST00000570510 GPX2P18283 190 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 MVDP53602 400 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 RBBP4Q09028 425 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 BNIP2Q12982 314 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 MAPRE2Q15555 327 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 FXNQ16595 210 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 C2orf68Q2NKX9 166 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 VAX1Q5SQQ9 334 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 C6orf10Q5SRN2 563 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 C1orf140Q5VVS0 124 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 CARD17Q5XLA6 110 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 TNFAIP8L2Q6P589 184 aaPredicted RBP9.39□□□□□ -0.91
VPS53-207ENST00000570510 FRRS1Q6ZNA5 592 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 Q6ZPA2 131 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 RHOUQ7L0Q8 258 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 RNF130Q86XS8 419 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 FUNDC1Q8IVP5 155 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 SLC30A8Q8IWU4 369 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 PARP8Q8N3A8 854 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 GTF3AQ92664 365 aaKnown RBP9.39□□□□□ -0.91
VPS53-207ENST00000570510 ZNF837Q96EG3 531 aaPredicted RBP9.39□□□□□ -0.91
VPS53-207ENST00000570510 DIRC2Q96SL1 478 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 SH3GL1Q99961 368 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 EBF4Q9BQW3 602 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 SPATA9Q9BWV2 254 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 RSPO3Q9BXY4 272 aaPredicted RBP9.39□□□□□ -0.91
VPS53-207ENST00000570510 PAIP1Q9H074 479 aaKnown RBP9.39□□□□□ -0.91
VPS53-207ENST00000570510 SLC38A1Q9H2H9 487 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 TMEM38AQ9H6F2 299 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 A4GALTQ9NPC4 353 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 B3GNT2Q9NY97 397 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 KLHL14Q9P2G3 628 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 ASH2LQ9UBL3 628 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 OR5V1Q9UGF6 321 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 ZNF232Q9UNY5 417 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 AP3M1Q9Y2T2 418 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 CACNG2Q9Y698 323 aa9.39□□□□□ -0.91
VPS53-207ENST00000570510 PLSCR5A0PG75 271 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 BBIP1A8MTZ0 92 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 CLIC1O00299 241 aa9.38□□□□□ -0.91
VPS53-207ENST00000570510 TRAF3IP2O43734 574 aaPredicted RBP9.38□□□□□ -0.91
VPS53-207ENST00000570510 UBL3O95164 117 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms