RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 NMNAT1Q9HAN9 279 aaPredicted RBP11.31□□□□□ -0.6
CNOT1-220ENST00000569916 CA10Q9NS85 328 aa11.31□□□□□ -0.6
CNOT1-220ENST00000569916 TMEM38BQ9NVV0 291 aa11.31□□□□□ -0.6
CNOT1-220ENST00000569916 NDE1Q9NXR1 346 aa11.31□□□□□ -0.6
CNOT1-220ENST00000569916 NDUFAF4Q9P032 175 aa11.31□□□□□ -0.6
CNOT1-220ENST00000569916 V9GYQ6 96 aa11.31□□□□□ -0.6
CNOT1-220ENST00000569916 ARFGEF3Q5TH69 2177 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 CR1P17927 2039 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 TRAV27A0A087WT01 109 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 A0A1W2PRQ8 180 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 EFCAB9A8MZ26 197 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 H7C417 338 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 hCG_2039718K7EN88 272 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 CDC42EP2O14613 210 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 ARPC2O15144 300 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 GMNNO75496 209 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 IGHMP01871 453 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 H1F0P07305 194 aaKnown RBP11.3□□□□□ -0.6
CNOT1-220ENST00000569916 ACADSP16219 412 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 ZNF14P17017 642 aaPredicted RBP11.3□□□□□ -0.6
CNOT1-220ENST00000569916 RHCEP18577 417 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 ACVR1BP36896 505 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 GPR4P46093 362 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 SLC9A3P48764 834 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 ZNF133P52736 654 aaPredicted RBP11.3□□□□□ -0.6
CNOT1-220ENST00000569916 MXRA7P84157 204 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 MYBPC1Q00872 1141 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 HGFACQ04756 655 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 PIGFQ07326 219 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 TOP3AQ13472 1001 aaPredicted RBP11.3□□□□□ -0.6
CNOT1-220ENST00000569916 DGCR6Q14129 220 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 CLEC12BQ2HXU8 276 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 MST1LQ2TV78 715 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 IQCCQ4KMZ1 466 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 DNM1P46Q6ZS02 220 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 IGFN1Q86VF2 1251 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 SKA3Q8IX90 412 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 SLC22A24Q8N4F4 322 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 SYT14Q8NB59 555 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 NUP37Q8NFH4 326 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 OR13C2Q8NGS9 318 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 FGFBP3Q8TAT2 258 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 HTRA1Q92743 480 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 HDAC2Q92769 488 aaKnown RBP11.3□□□□□ -0.6
CNOT1-220ENST00000569916 NMD3Q96D46 503 aaKnown RBP11.3□□□□□ -0.6
CNOT1-220ENST00000569916 MS4A3Q96HJ5 214 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 DHRS1Q96LJ7 313 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 TXNIPQ9H3M7 391 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 FAM53CQ9NYF3 392 aa11.3□□□□□ -0.6
CNOT1-220ENST00000569916 STX18Q9P2W9 335 aaKnown RBP11.3□□□□□ -0.6
CNOT1-220ENST00000569916 MTORP42345 2549 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 IGKV1D-43A0A0B4J1Z2 117 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 PDE5AO76074 875 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 DIRAS1O95057 198 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 UBL3O95164 117 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 GIPRP48546 466 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 PTDSS1P48651 473 aaKnown RBP11.29□□□□□ -0.6
CNOT1-220ENST00000569916 RIPPLY3P57055 190 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 RPL27P61353 136 aaKnown RBP11.29□□□□□ -0.6
CNOT1-220ENST00000569916 TNK1Q13470 666 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 TAF11Q15544 211 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 SWI5Q1ZZU3 235 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 ANKDD1AQ495B1 522 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 SPATS1Q496A3 300 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 NRN1LQ496H8 165 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 C10orf128Q5T292 105 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 PODNL1Q6PEZ8 512 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 TMPRSS11FQ6ZWK6 438 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 OAFQ86UD1 273 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 CCDC197Q8NCU1 140 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 OR4F15Q8NGB8 312 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 OR51A7Q8NH64 312 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 FBXO17Q96EF6 278 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 PYURFQ96I23 114 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 NSMCE2Q96MF7 247 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 TSPAN32Q96QS1 320 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 TNFRSF13CQ96RJ3 184 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 KCNK17Q96T54 332 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 FUZQ9BT04 418 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 DENND2DQ9H6A0 471 aaPredicted RBP11.29□□□□□ -0.6
CNOT1-220ENST00000569916 ZNF442Q9H7R0 627 aa11.29□□□□□ -0.6
CNOT1-220ENST00000569916 BARX1Q9HBU1 254 aaPredicted RBP11.29□□□□□ -0.6
CNOT1-220ENST00000569916 FAM32AQ9Y421 112 aaKnown RBP11.29□□□□□ -0.6
CNOT1-220ENST00000569916 TRBV4-1A0A0J9YWV2 114 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 SMAD7O15105 426 aaKnown RBP11.28□□□□□ -0.6
CNOT1-220ENST00000569916 ENTPD5O75356 428 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 SLC2A10O95528 541 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 RAB36O95755 333 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 PATE4P0C8F1 98 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 OR8G3PP0DMU2 310 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 ZNF26P17031 533 aaPredicted RBP11.28□□□□□ -0.6
CNOT1-220ENST00000569916 LIMS1P48059 325 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 ZNF84P51523 738 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 MNAT1P51948 309 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 CTXN1P60606 82 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 RAB1AP62820 205 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 CHRNB3Q05901 458 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 FMODQ06828 376 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 SEC23BQ15437 767 aa11.28□□□□□ -0.6
CNOT1-220ENST00000569916 ADIPOQQ15848 244 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms