RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 HOXD4P09016 255 aaPredicted RBP13.19□□□□□ -0.3
VPS35-210ENST00000568784 ZP3P21754 424 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 LSSP48449 732 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 GPAT4Q86UL3 456 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 TEX19Q8NA77 164 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 FAM3DQ96BQ1 224 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 TCEAL2Q9H3H9 227 aaPredicted RBP13.19□□□□□ -0.3
VPS35-210ENST00000568784 IL23AQ9NPF7 189 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 HAO2Q9NYQ3 351 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 DHDHQ9UQ10 334 aa13.19□□□□□ -0.3
VPS35-210ENST00000568784 TMEM82A0PJX8 343 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 SLC22A23A1A5C7 686 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 DCNP07585 359 aaKnown RBP13.18□□□□□ -0.3
VPS35-210ENST00000568784 CD14P08571 375 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 FBXW4P57775 412 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 PRPS1P60891 318 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 GFOD2Q3B7J2 385 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 DMRTC1Q5HYR2 192 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 CA13Q8N1Q1 262 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 OR2G2Q8NGZ5 317 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 ZNF417Q8TAU3 575 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 HAVCR2Q8TDQ0 301 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 CCDC107Q8WV48 283 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 CPNE2Q96FN4 548 aaPredicted RBP13.18□□□□□ -0.3
VPS35-210ENST00000568784 LRRC46Q96FV0 321 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 INTS14Q96SY0 518 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 TINAGL1Q9GZM7 467 aaPredicted RBP13.18□□□□□ -0.3
VPS35-210ENST00000568784 OR2S2Q9NQN1 319 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 KIF25Q9UIL4 384 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 MOKQ9UQ07 419 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 SLC16A7O60669 478 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 AKR7A3O95154 331 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 HLA-AP01891 365 aaKnown RBP13.18□□□□□ -0.3
VPS35-210ENST00000568784 CSF1P09603 554 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 ST6GAL1P15907 406 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 GLYATL3Q5SZD4 288 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 ATRAIDQ6UW56 229 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 AIFM2Q9BRQ8 373 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 PLA2G2FQ9BZM2 168 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 CPNE7Q9UBL6 633 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 OR14I1A6ND48 311 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 GGT3PA6NGU5 568 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 C17orf51A8MQB3 221 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 GALR3O60755 368 aaPredicted RBP13.18□□□□□ -0.3
VPS35-210ENST00000568784 GLSO94925 669 aaPredicted RBP13.18□□□□□ -0.3
VPS35-210ENST00000568784 CD34P28906 385 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 GAB4Q2WGN9 574 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 C2orf76Q3KRA6 126 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 NHLRC3Q5JS37 347 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 HLA-DQA1Q5Y7H0 255 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 OR4S1Q8NGB4 309 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 KLHL15Q96M94 604 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 TMEM106CQ9BVX2 250 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 POTEKPQ9BYX7 375 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 FAM60AQ9NP50 221 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 IFT46Q9NQC8 304 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 STEAP1Q9UHE8 339 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 KCNMB2Q9Y691 235 aa13.18□□□□□ -0.3
VPS35-210ENST00000568784 OR5K3A6NET4 321 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 CA3P07451 260 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 RNH1P13489 461 aaKnown RBP13.17□□□□□ -0.3
VPS35-210ENST00000568784 GABRA1P14867 456 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 ZNF169Q14929 603 aaPredicted RBP13.17□□□□□ -0.3
VPS35-210ENST00000568784 MED25Q71SY5 747 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 FAM219AQ8IW50 185 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 C16orf52Q8NHV5 167 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 ZNF75AQ96N20 296 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 SLC6A15Q9H2J7 730 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 PCDHB16Q9NRJ7 776 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 UPB1Q9UBR1 384 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 FBXO9Q9UK97 447 aaPredicted RBP13.17□□□□□ -0.3
VPS35-210ENST00000568784 COL4A3Q01955 1670 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 TMEM235A6NFC5 223 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 PRAMEF2O60811 474 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 LYPD3O95274 346 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 IFNA6P05013 189 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 MRPS10P82664 201 aaKnown RBP13.17□□□□□ -0.3
VPS35-210ENST00000568784 TMEM205Q6UW68 189 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 MARCH3Q86UD3 253 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 BPIFB2Q8N4F0 458 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 PXT1Q8NFP0 134 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 DPYSL5Q9BPU6 564 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 G6PC3Q9BUM1 346 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 LINC01553A4QN01 128 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 SOX1O00570 391 aaPredicted RBP13.17□□□□□ -0.3
VPS35-210ENST00000568784 IL32P24001 234 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 TACR3P29371 465 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 CXADRP78310 365 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 RPL18Q07020 188 aaKnown RBP13.17□□□□□ -0.3
VPS35-210ENST00000568784 SLC6A19Q695T7 634 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 SEZ6L2Q6UXD5 910 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 MDGA2Q7Z553 956 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.17□□□□□ -0.3
VPS35-210ENST00000568784 LHFPL5Q8TAF8 219 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 STK35Q8TDR2 534 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 C3orf49Q96BT1 292 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 SLC25A44Q96H78 314 aaPredicted RBP13.17□□□□□ -0.3
VPS35-210ENST00000568784 NPDC1Q9NQX5 325 aaPredicted RBP13.17□□□□□ -0.3
VPS35-210ENST00000568784 D6RAR5 112 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 G3V3Q6 166 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms