RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 HIST1H2ACQ93077 130 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 C1orf159Q96HA4 380 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 SH3GL3Q99963 347 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 SIKE1Q9BRV8 207 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 NANOGQ9H9S0 305 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 MEPEQ9NQ76 525 aaPredicted RBP13.81□□□□□ -0.2
CLN3-229ENST00000567963 TMEM38BQ9NVV0 291 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 MYEF2Q9P2K5 600 aaKnown RBP13.81□□□□□ -0.2
CLN3-229ENST00000567963 SLC7A8Q9UHI5 535 aa13.81□□□□□ -0.2
CLN3-229ENST00000567963 A0A0G2JND7 137 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 BLOC1S5-TXNDC5H3BN57 136 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 FBP2O00757 339 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 EDF1O60869 148 aaKnown RBP13.8□□□□□ -0.2
CLN3-229ENST00000567963 ENTPD5O75356 428 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 BCL10O95999 233 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 QDPRP09417 244 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 UMPSP11172 480 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 COL8A2P25067 703 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 CDH15P55291 814 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 SRSF2Q01130 221 aaKnown RBP13.8□□□□□ -0.2
CLN3-229ENST00000567963 UGT2A3Q6UWM9 527 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 DUSP13Q9UII6 198 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 TMEFF2Q9UIK5 374 aaPredicted RBP13.8□□□□□ -0.2
CLN3-229ENST00000567963 FZR1Q9UM11 496 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 FARS2O95363 451 aaKnown RBP13.8□□□□□ -0.2
CLN3-229ENST00000567963 HPXP02790 462 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 LSP1P33241 339 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 CYLC2Q14093 348 aaPredicted RBP13.8□□□□□ -0.2
CLN3-229ENST00000567963 MAD2L1BPQ15013 274 aaPredicted RBP13.8□□□□□ -0.2
CLN3-229ENST00000567963 HIST3H3Q16695 136 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 SLC30A7Q8NEW0 376 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 MCHR2Q969V1 340 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 C19orf24Q9BVV8 132 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 SH3GLB1Q9Y371 365 aa13.8□□□□□ -0.2
CLN3-229ENST00000567963 IGHG1P01857 330 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 MT-ND1P03886 318 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 ACHEP22303 614 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 RUNX1T1Q06455 604 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 CCNIQ14094 377 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 NRN1LQ496H8 165 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 REP15Q6BDI9 236 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 HDXQ7Z353 690 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 NANOGNBQ7Z5D8 188 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 DPPA2Q7Z7J5 298 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 OR4K5Q8NGD3 323 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 RDH5Q92781 318 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 ZNF347Q96SE7 839 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 SH3GL1Q99961 368 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 MRPL13Q9BYD1 178 aaKnown RBP13.79□□□□□ -0.2
CLN3-229ENST00000567963 RNF121Q9H920 327 aa13.79□□□□□ -0.2
CLN3-229ENST00000567963 A0A1W2PRG6 482 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 SLC22A23A1A5C7 686 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 DYNC1I1O14576 645 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 F13BP05160 661 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 VIMP08670 466 aaKnown RBP13.78□□□□□ -0.2
CLN3-229ENST00000567963 NAT2P11245 290 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 CCL2P13500 99 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 FUT1P19526 365 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 CLRN1P58418 232 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 RPL18Q07020 188 aaKnown RBP13.78□□□□□ -0.2
CLN3-229ENST00000567963 SLC36A2Q495M3 483 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 RABL3Q5HYI8 236 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 RGS7BPQ6MZT1 257 aaPredicted RBP13.78□□□□□ -0.2
CLN3-229ENST00000567963 TMEM53Q6P2H8 277 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 SLC16A14Q7RTX9 510 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 CARM1Q86X55 608 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 CALHM3Q86XJ0 350 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 NKAIN4Q8IVV8 208 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 PAQR4Q8N4S7 273 aaPredicted RBP13.78□□□□□ -0.2
CLN3-229ENST00000567963 PFN4Q8NHR9 129 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 LRRC58Q96CX6 371 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 SEPHS2Q99611 448 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 ECSITQ9BQ95 431 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 VIPAS39Q9H9C1 493 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 BAG5Q9UL15 447 aa13.78□□□□□ -0.2
CLN3-229ENST00000567963 ZNF346Q9UL40 294 aaKnown RBP13.78□□□□□ -0.2
CLN3-229ENST00000567963 A0A1W2PPW3 197 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 CENPBD1B2RD01 187 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 B4DSR2 109 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 CLPTM1O96005 669 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 PTHP01270 115 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 IGF2P01344 180 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 FAM157BP0CG42 384 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 ZNF250P15622 560 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 TNFRSF1BP20333 461 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 RBM34P42696 430 aaKnown RBP13.77□□□□□ -0.21
CLN3-229ENST00000567963 GPR6P46095 362 aaPredicted RBP13.77□□□□□ -0.21
CLN3-229ENST00000567963 DVL1P1P54792 670 aaPredicted RBP13.77□□□□□ -0.21
CLN3-229ENST00000567963 UGT2B15P54855 530 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 TMEM33P57088 247 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 TAS2R41P59536 307 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 MRPS11P82912 194 aaKnown RBP13.77□□□□□ -0.21
CLN3-229ENST00000567963 MYBPC1Q00872 1141 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 LIPNQ5VXI9 398 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 SYT14Q8NB59 555 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 OR8J3Q8NGG0 315 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 TMEM255BQ8WV15 326 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 YIPF5Q969M3 257 aa13.77□□□□□ -0.21
CLN3-229ENST00000567963 POLR2J2Q9GZM3 115 aaKnown RBP13.77□□□□□ -0.21
CLN3-229ENST00000567963 RACGAP1Q9H0H5 632 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms