RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MCHR2Q969V1 340 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 GPX7Q96SL4 187 aaPredicted RBP17.12■□□□□ 0.33
CLN3-225ENST00000566824 PDP1Q9P0J1 537 aaPredicted RBP17.12■□□□□ 0.33
CLN3-225ENST00000566824 PDZD2O15018 2839 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 TEX13CA0A0J9YWL9 993 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 H3BNX3 289 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 HOXB6P17509 224 aaKnown RBP17.11■□□□□ 0.33
CLN3-225ENST00000566824 SSTR2P30874 369 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 PPA1Q15181 289 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 ATP6AP1Q15904 470 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 OR7E24Q6IFN5 339 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 LINC00471Q8N535 108 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 PIK3IP1Q96FE7 263 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 DGCR6LQ9BY27 220 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 YY1AP1Q9H869 796 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 B3GAT2Q9NPZ5 323 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 RASSF1Q9NS23 344 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 ZNF226Q9NYT6 803 aa17.11■□□□□ 0.33
CLN3-225ENST00000566824 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.1■□□□□ 0.33
CLN3-225ENST00000566824 ZNF99A8MXY4 864 aaPredicted RBP17.1■□□□□ 0.33
CLN3-225ENST00000566824 ARHGEF9O43307 516 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 DHHO43323 396 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 E2F6O75461 281 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 SOX14O95416 240 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 B4GALT1P15291 398 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 TGFBR3Q03167 851 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 TAF11Q15544 211 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 ANKRD16Q6P6B7 361 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 KLHL24Q6TFL4 600 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 DPY19L2P2Q6ZN68 376 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 PTCHD4Q6ZW05 846 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 NRGNQ92686 78 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 BOD1Q96IK1 185 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 ZNF570Q96NI8 536 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 GRHPRQ9UBQ7 328 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 REV1Q9UBZ9 1251 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 MGAT4BQ9UQ53 548 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 UGT2A1Q9Y4X1 527 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 CDH10Q9Y6N8 788 aa17.1■□□□□ 0.33
CLN3-225ENST00000566824 HEATR1Q9H583 2144 aaKnown RBP17.1■□□□□ 0.33
CLN3-225ENST00000566824 DPRXA6NFQ7 191 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 SOCS2O14508 198 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 DEAF1O75398 565 aaPredicted RBP17.09■□□□□ 0.33
CLN3-225ENST00000566824 PLAUP00749 431 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 ZNF83P51522 516 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 ZNF133P52736 654 aaPredicted RBP17.09■□□□□ 0.33
CLN3-225ENST00000566824 ZSCAN26Q16670 478 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 CLEC12AQ5QGZ9 265 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 SLC25A47Q6Q0C1 308 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 RASSF6Q6ZTQ3 369 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 TMEM200AQ86VY9 491 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 P2RY8Q86VZ1 359 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 MAGEE2Q8TD90 523 aaPredicted RBP17.09■□□□□ 0.33
CLN3-225ENST00000566824 PLPPR2Q96GM1 343 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 ERMAPQ96PL5 475 aaPredicted RBP17.09■□□□□ 0.33
CLN3-225ENST00000566824 NOX3Q9HBY0 568 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 POFUT2Q9Y2G5 429 aa17.09■□□□□ 0.33
CLN3-225ENST00000566824 ARRDC5A6NEK1 342 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 ENTPD5O75356 428 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 TXNDC12O95881 172 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 SDHAP31040 664 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 SLC6A6P31641 620 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 CDAP32320 146 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 CDKN2AP42771 156 aaKnown RBP17.08■□□□□ 0.32
CLN3-225ENST00000566824 SH3BGRP55822 239 aaPredicted RBP17.08■□□□□ 0.32
CLN3-225ENST00000566824 CD47Q08722 323 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 KRR1Q13601 381 aaKnown RBP17.08■□□□□ 0.32
CLN3-225ENST00000566824 GK3PQ14409 553 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 SHQ1Q6PI26 577 aaKnown RBP17.08■□□□□ 0.32
CLN3-225ENST00000566824 KLHL17Q6TDP4 642 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 ZNF813Q6ZN06 617 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 CDC20BQ86Y33 519 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 C17orf78Q8N4C9 275 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 OR4Q3Q8NH05 313 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 FGFBP3Q8TAT2 258 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 NSMAFQ92636 917 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 MUCL1Q96DR8 90 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 FOXB1Q99853 325 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 USB1Q9BQ65 265 aaKnown RBP17.08■□□□□ 0.32
CLN3-225ENST00000566824 IFT27Q9BW83 186 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 SEMA6AQ9H2E6 1030 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 IL20Q9NYY1 176 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 ZNF224Q9NZL3 707 aa17.08■□□□□ 0.32
CLN3-225ENST00000566824 SLC22A23A1A5C7 686 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 A6NIZ1 184 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 CENPBD1B2RD01 187 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 FASP25445 335 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 RAP1BP61224 184 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 RAP1AP62834 184 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 ETFDHQ16134 617 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 C10orf128Q5T292 105 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 FAM205BPQ63HN1 556 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 CD300LDQ6UXZ3 194 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 ZNF627Q7L945 461 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 HDDC2Q7Z4H3 204 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 MYPOPQ86VE0 399 aaPredicted RBP17.07■□□□□ 0.32
CLN3-225ENST00000566824 FOXN4Q96NZ1 517 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 RAB3IPQ96QF0 476 aaPredicted RBP17.07■□□□□ 0.32
CLN3-225ENST00000566824 PKP2Q99959 881 aa17.07■□□□□ 0.32
CLN3-225ENST00000566824 ALG12Q9BV10 488 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms