RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 MECP2P51608 486 aaKnown RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF267Q14586 743 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 C14orf28Q4W4Y0 310 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SLC6A19Q695T7 634 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ZC3H14Q6PJT7 736 aaKnown RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ARSKQ6UWY0 536 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SHISA5Q8N114 240 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 CA13Q8N1Q1 262 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 OR6K6Q8NGW6 343 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 RBPMSQ93062 196 aaKnown RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 ANKRD9Q96BM1 317 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 HAVCR1Q96D42 359 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SEC22CQ9BRL7 303 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 LMF2Q9BU23 707 aaKnown RBP12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SLITRK2Q9H156 845 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SMOC1Q9H4F8 434 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 CDCP1Q9H5V8 836 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 RDH8Q9NYR8 311 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 PIPOXQ9P0Z9 390 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 OR5V1Q9UGF6 321 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 SSUH2Q9Y2M2 353 aa12.04□□□□□ -0.48
VPS4A-204ENST00000566354 FAM221BA6H8Z2 402 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 C2orf74A8MZ97 194 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 GNB5O14775 395 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 SSX5O60225 188 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 GLCEO94923 617 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 OR2A4O95047 310 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 ALDOBP05062 364 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 TACSTD2P09758 323 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 RPS2P15880 293 aaKnown RBP12.03□□□□□ -0.48
VPS4A-204ENST00000566354 NFYAP23511 347 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-204ENST00000566354 EPHA8P29322 1005 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-204ENST00000566354 P2RX1P51575 399 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 ART1P52961 327 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 NANOS3P60323 173 aaKnown RBP12.03□□□□□ -0.48
VPS4A-204ENST00000566354 NHLRC3Q5JS37 347 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF684Q5T5D7 378 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 C3P1Q6ZMU1 363 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 KANSL1Q7Z3B3 1105 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 GPAT4Q86UL3 456 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 OOSP2Q86WS3 158 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF565Q8N9K5 539 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 MIB2Q96AX9 1013 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 SFXN2Q96NB2 322 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 OR2A7Q96R45 310 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 SLC38A3Q99624 504 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 TMPRSS13Q9BYE2 586 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF69Q9UC07 566 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF337Q9Y3M9 751 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 ETV7Q9Y603 341 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 A0A087WUJ7 227 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 L7N2F9 121 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 OR10H2O60403 315 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 IGKV1D-16P01601 117 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 APOC1P02654 83 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 MAPK3P27361 379 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-204ENST00000566354 CLDN12P56749 244 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 HSD17B7P56937 341 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 PSMA6P60900 246 aaKnown RBP12.03□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF141Q15928 474 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 TRIM61Q5EBN2 209 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 ZNF626Q68DY1 528 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 FAM198BQ6UWH4 519 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 THEM6Q8WUY1 208 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 RGP1Q92546 391 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-204ENST00000566354 MARC2Q969Z3 335 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.03□□□□□ -0.48
VPS4A-204ENST00000566354 GAREM1Q9H706 876 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 TCF7L1Q9HCS4 588 aa12.03□□□□□ -0.48
VPS4A-204ENST00000566354 SPTBP11277 2137 aa12.02□□□□□ -0.48
VPS4A-204ENST00000566354 EFCAB7A8K855 629 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 IDSB3KWA1 339 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 NDUFB6O95139 128 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 CDK2P24941 298 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 PRPS1P60891 318 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 LINC00303Q3SY05 128 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 STAC2Q6ZMT1 411 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 DGAT2L6Q6ZPD8 337 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 CCDC36Q8IYA8 594 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 OR4N2Q8NGD1 307 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 BAHD1Q8TBE0 780 aaPredicted RBP12.02□□□□□ -0.49
VPS4A-204ENST00000566354 ELMOD3Q96FG2 381 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 PPA2Q9H2U2 334 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 RXFP3Q9NSD7 469 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 LRIT1Q9P2V4 623 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 PRELID3BQ9Y3B1 194 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 R4GN57 208 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 OR2M5A3KFT3 312 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 HRGP04196 525 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 CXCL2P19875 107 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 S1PR1P21453 382 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 MAGEB1P43366 347 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 RAB38P57729 211 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 ERVK-25P63136 954 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 Q499Y3 187 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 NKAIN2Q5VXU1 208 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 AVL9Q8NBF6 648 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 MOSPD2Q8NHP6 518 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 SAP25Q8TEE9 199 aa12.02□□□□□ -0.49
VPS4A-204ENST00000566354 RNF166Q96A37 237 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms