RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZNF613Q6PF04 617 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 SHQ1Q6PI26 577 aaKnown RBP14.42□□□□□ -0.1
CLN3-211ENST00000564091 DLEU7Q6UYE1 221 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 DEF8Q6ZN54 512 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 PTOV1Q86YD1 416 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 GPR32P1Q8NGA4 272 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 OR4D11Q8NGI4 311 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 OR6T1Q8NGN1 323 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 OR51F2Q8NH61 342 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 ZNF566Q969W8 418 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 C7orf26Q96N11 449 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 ARHGDIGQ99819 225 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 CPPED1Q9BRF8 314 aaPredicted RBP14.42□□□□□ -0.1
CLN3-211ENST00000564091 CCDC28BQ9BUN5 200 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 ZNF416Q9BWM5 594 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 PLA2G12AQ9BZM1 189 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 RNF121Q9H920 327 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 CORO2BQ9UQ03 480 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 ANGPT4Q9Y264 503 aa14.42□□□□□ -0.1
CLN3-211ENST00000564091 A0A0A6YYJ9 748 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 DHHO43323 396 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 RNF13O43567 381 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 CHP2O43745 196 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 ZNF500O60304 480 aaPredicted RBP14.41□□□□□ -0.1
CLN3-211ENST00000564091 FMO6PO60774 539 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 QDPRP09417 244 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 PCBP3P57721 371 aaKnown RBP14.41□□□□□ -0.1
CLN3-211ENST00000564091 CCL8P80075 99 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 MVKQ03426 396 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 ZP4Q12836 540 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 RUNDC3AQ59EK9 446 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 ENTPD8Q5MY95 495 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 AVPI1Q5T686 147 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 TSPYL5Q86VY4 417 aaPredicted RBP14.41□□□□□ -0.1
CLN3-211ENST00000564091 OR4K5Q8NGD3 323 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 VANGL1Q8TAA9 524 aaPredicted RBP14.41□□□□□ -0.1
CLN3-211ENST00000564091 SLC25A44Q96H78 314 aaPredicted RBP14.41□□□□□ -0.1
CLN3-211ENST00000564091 ZNF385DQ9H6B1 395 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 HINT3Q9NQE9 182 aaKnown RBP14.41□□□□□ -0.1
CLN3-211ENST00000564091 NANSQ9NR45 359 aa14.41□□□□□ -0.1
CLN3-211ENST00000564091 C17orf100A8MU93 164 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 AVPP01185 164 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 LCKP06239 509 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 SELENOVP59797 346 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 MYBPC1Q00872 1141 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 RBBP4Q09028 425 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 SELPLGQ14242 412 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 TMEM154Q6P9G4 183 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 TTC33Q6PID6 262 aaPredicted RBP14.4□□□□□ -0.1
CLN3-211ENST00000564091 C1orf229Q6ZS94 237 aaPredicted RBP14.4□□□□□ -0.1
CLN3-211ENST00000564091 C11orf65Q8NCR3 313 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 ICA1LQ8NDH6 482 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 SYNPRQ8TBG9 265 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 ADAMTS16Q8TE57 1224 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 GTF3AQ92664 365 aaKnown RBP14.4□□□□□ -0.1
CLN3-211ENST00000564091 EVA1AQ9H8M9 152 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 CDH20Q9HBT6 801 aa14.4□□□□□ -0.1
CLN3-211ENST00000564091 IGLV3-9A0A075B6K5 115 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 LOC105371242A0A075B767 164 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 SLC22A23A1A5C7 686 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 FARS2O95363 451 aaKnown RBP14.39□□□□□ -0.11
CLN3-211ENST00000564091 BCL10O95999 233 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 PGA4P0DJD7 388 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 PGA3P0DJD8 388 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 UMPSP11172 480 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 ZNF250P15622 560 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 KLF3P57682 345 aaPredicted RBP14.39□□□□□ -0.11
CLN3-211ENST00000564091 MTPNP58546 118 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 CYP51A1Q16850 503 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 TMEM53Q6P2H8 277 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 SLC16A14Q7RTX9 510 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 LRRC8CQ8TDW0 803 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 ZNF418Q8TF45 676 aaPredicted RBP14.39□□□□□ -0.11
CLN3-211ENST00000564091 ZFAND2BQ8WV99 257 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 C11orf40Q8WZ69 217 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 MCHR2Q969V1 340 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 ZNF347Q96SE7 839 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 SLC7A7Q9UM01 511 aa14.39□□□□□ -0.11
CLN3-211ENST00000564091 TRAV20A0A0B4J274 112 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 BLOC1S5-TXNDC5H3BN57 136 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 ERLIN1O75477 346 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 MPZL1O95297 269 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 PNPP00491 289 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 HIST1H2ABP04908 130 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 EPHA1P21709 976 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 ATP4BP51164 291 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 UCP2P55851 309 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 ACTG1P63261 375 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 GLO1Q04760 184 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 TBC1D28Q2M2D7 210 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 SLC36A2Q495M3 483 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 ACSM5Q6NUN0 579 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 HIST3H2AQ7L7L0 130 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 DHDDSQ86SQ9 333 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 SYT14Q8NB59 555 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 ZNF519Q8TB69 540 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 SNX33Q8WV41 574 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 HIST1H2ACQ93077 130 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 ZNF665Q9H7R5 613 aa14.38□□□□□ -0.11
CLN3-211ENST00000564091 G6PC2Q9NQR9 355 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms