RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ZNF141Q15928 474 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 CT45A2Q5DJT8 189 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 BCORP1Q8N888 145 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 ZNF454Q8N9F8 522 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 TCEAL2Q9H3H9 227 aaPredicted RBP11.99□□□□□ -0.49
CLN3-210ENST00000563874 IGFLR1Q9H665 355 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 EXO5Q9H790 373 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 MED11Q9P086 117 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 STEAP1Q9UHE8 339 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 CDV3Q9UKY7 258 aaKnown RBP11.99□□□□□ -0.49
CLN3-210ENST00000563874 ETV7Q9Y603 341 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 OR4C45A6NMZ5 311 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 C2orf74A8MZ97 194 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 NPIPB9F8W1W9 429 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 FOXS1O43638 330 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 CTAG2O75638 210 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 RLN2P04090 185 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 POU3F4P49335 361 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 ARHGDIBP52566 201 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 CD226Q15762 336 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 ITPRIPL2Q3MIP1 535 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 TSSK4Q6SA08 328 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 SLC35D2Q76EJ3 337 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 FAM122BQ7Z309 247 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 TMED4Q7Z7H5 227 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 PRSS35Q8N3Z0 413 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 OR1S1Q8NH92 325 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 C16orf52Q8NHV5 167 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 TSEN15Q8WW01 171 aaKnown RBP11.99□□□□□ -0.49
CLN3-210ENST00000563874 FBXW5Q969U6 566 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 TOE1Q96GM8 510 aaKnown RBP11.99□□□□□ -0.49
CLN3-210ENST00000563874 SYT4Q9H2B2 425 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 EXOSC3Q9NQT5 275 aaKnown RBP11.99□□□□□ -0.49
CLN3-210ENST00000563874 PRDM9Q9NQV7 894 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 MYEF2Q9P2K5 600 aaKnown RBP11.99□□□□□ -0.49
CLN3-210ENST00000563874 C2orf16Q68DN1 1984 aa11.99□□□□□ -0.49
CLN3-210ENST00000563874 TRBV5-5A0A0J9YX44 114 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 A8MXK9 166 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 LDOC1O95751 146 aaPredicted RBP11.98□□□□□ -0.49
CLN3-210ENST00000563874 CELA2BP08218 269 aaPredicted RBP11.98□□□□□ -0.49
CLN3-210ENST00000563874 CD14P08571 375 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 ITGA5P08648 1049 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 CCKBRP32239 447 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 GRM7Q14831 915 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 FAM74A1Q5RGS3 127 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 ZNF660Q6AZW8 331 aaPredicted RBP11.98□□□□□ -0.49
CLN3-210ENST00000563874 ATRAIDQ6UW56 229 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 KRT77Q7Z794 578 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 MFFQ9GZY8 342 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 ZNF230Q9UIE0 474 aaPredicted RBP11.98□□□□□ -0.49
CLN3-210ENST00000563874 PCOLCE2Q9UKZ9 415 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 EFCAB7A8K855 629 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 BET1O15155 118 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 APOC3P02656 99 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 ST6GAL1P15907 406 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 IL32P24001 234 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 FNTBP49356 437 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 MECP2P51608 486 aaKnown RBP11.98□□□□□ -0.49
CLN3-210ENST00000563874 LBX1P52954 281 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 BAMBIQ13145 260 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 ZNF74Q16587 644 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 ALG11Q2TAA5 492 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 MESTQ5EB52 335 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 TMEM240Q5SV17 173 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 NKAIN2Q5VXU1 208 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 LRRN1Q6UXK5 716 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 ARL6IP6Q8N6S5 226 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 PLPP7Q8NBV4 271 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 SLC22A8Q8TCC7 542 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 HOXB13Q92826 284 aaPredicted RBP11.98□□□□□ -0.49
CLN3-210ENST00000563874 FGF14Q92915 247 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 LPAR4Q99677 370 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 COMMD4Q9H0A8 199 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 ZMAT3Q9HA38 289 aaKnown RBP11.98□□□□□ -0.49
CLN3-210ENST00000563874 CPNE7Q9UBL6 633 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 GRHPRQ9UBQ7 328 aa11.98□□□□□ -0.49
CLN3-210ENST00000563874 APBB3O95704 486 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 ICAM2P13598 275 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 PARM1Q6UWI2 310 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 CDC20BQ86Y33 519 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 AVL9Q8NBF6 648 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 BVESQ8NE79 360 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 PHOSPHO1Q8TCT1 267 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 RSC1A1Q92681 617 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 KTI12Q96EK9 354 aaPredicted RBP11.97□□□□□ -0.49
CLN3-210ENST00000563874 MRI1Q9BV20 369 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 GDE1Q9NZC3 331 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 KCNG2Q9UJ96 466 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 A0A0J9YY10 115 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 C17orf51A8MQB3 221 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 HMSDA8MTL9 139 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 KRBOX1C9JBD0 128 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 DOK2O60496 412 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 HOXB2P14652 356 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 SDHAP31040 664 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 RPL18Q07020 188 aaKnown RBP11.97□□□□□ -0.49
CLN3-210ENST00000563874 ZNF273Q14593 569 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 ANKRD16Q6P6B7 361 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 CORO6Q6QEF8 472 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 OVCH2Q7RTZ1 564 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms