RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 LRRC58Q96CX6 371 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 SOX7Q9BT81 388 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 MRPL13Q9BYD1 178 aaKnown RBP14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 REV1Q9UBZ9 1251 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 SLC7A8Q9UHI5 535 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 BAG5Q9UL15 447 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 BCL10O95999 233 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 TGFAP01135 160 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 MT-ND1P03886 318 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 HIST1H2ABP04908 130 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 SRD5A1P18405 259 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 GALK2Q01415 458 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 RAB39AQ14964 217 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 RABL3Q5HYI8 236 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 ERICH5Q6P6B1 374 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 HIST3H2AQ7L7L0 130 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 HIST1H2ACQ93077 130 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 TMEM120AQ9BXJ8 343 aa14.8□□□□□ -0.04
VPS9D1-203ENST00000563798 SLC22A23A1A5C7 686 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 LRP5LA4QPB2 252 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 NPIPB13A6NJU9 1138 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 BBIP1A8MTZ0 92 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 NPIPB4C9JG80 1138 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 KPNA4O00629 521 aaPredicted RBP14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 OR5F1O95221 314 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 FARS2O95363 451 aaKnown RBP14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 IGHG1P01857 330 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 QDPRP09417 244 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 THRBP10828 461 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 HNF1AP20823 631 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 LSP1P33241 339 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 UGT2B15P54855 530 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 MRPS11P82912 194 aaKnown RBP14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 MELKQ14680 651 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 SVEP1Q4LDE5 3571 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 ELFN2Q5R3F8 820 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 REP15Q6BDI9 236 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 NANOGNBQ7Z5D8 188 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 CARM1Q86X55 608 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 ZNF583Q96ND8 569 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 ECSITQ9BQ95 431 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 C1orf198Q9H425 327 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 CHODLQ9H9P2 273 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 ARGLU1Q9NWB6 273 aaPredicted RBP14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 SH3GLB1Q9Y371 365 aa14.79□□□□□ -0.04
VPS9D1-203ENST00000563798 HTR3EA5X5Y0 456 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 OR7A10O76100 309 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 SNAP29O95721 258 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 IFNA14P01570 189 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 PATE4P0C8F1 98 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 FUT1P19526 365 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 RPL18Q07020 188 aaKnown RBP14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 GKAP1Q5VSY0 366 aaPredicted RBP14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 HDDC2Q7Z4H3 204 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 LRP11Q86VZ4 500 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 NKAIN4Q8IVV8 208 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 LINC01356Q8N9X3 169 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 MCHR2Q969V1 340 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 REPIN1Q9BWE0 567 aaKnown RBP14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 RIMS3Q9UJD0 308 aa14.78□□□□□ -0.04
VPS9D1-203ENST00000563798 A0A1W2PRG6 482 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 BLOC1S5-TXNDC5H3BN57 136 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 PTHP01270 115 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 UMPSP11172 480 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 ACHEP22303 614 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 APEX1P27695 318 aaKnown RBP14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 IL2RGP31785 369 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 DAP3P51398 398 aaKnown RBP14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 CDH15P55291 814 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 RUNX1T1Q06455 604 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 KLF10Q13118 480 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 CR1LQ2VPA4 569 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 KRTAP24-1Q3LI83 254 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 SLC36A2Q495M3 483 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 C10orf128Q5T292 105 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 ARMC4Q5T2S8 1044 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 TMEM53Q6P2H8 277 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 SLC30A7Q8NEW0 376 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 NOXO1Q8NFA2 376 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 OR4K5Q8NGD3 323 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 TMEM255BQ8WV15 326 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 TMEM239Q8WW34 195 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 ASB10Q8WXI3 467 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 RDH5Q92781 318 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 NMD3Q96D46 503 aaKnown RBP14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 SGTBQ96EQ0 304 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 SH3GL3Q99963 347 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 SYT3Q9BQG1 590 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 RACGAP1Q9H0H5 632 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 TPK1Q9H3S4 243 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 SMURF2Q9HAU4 748 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 SAR1AQ9NR31 198 aa14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 MYEF2Q9P2K5 600 aaKnown RBP14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 STX18Q9P2W9 335 aaKnown RBP14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 ZNF346Q9UL40 294 aaKnown RBP14.77□□□□□ -0.05
VPS9D1-203ENST00000563798 IGLV3-9A0A075B6K5 115 aa14.76□□□□□ -0.05
VPS9D1-203ENST00000563798 LYNX1G3V0Z9 82 aa14.76□□□□□ -0.05
VPS9D1-203ENST00000563798 MRASO14807 208 aa14.76□□□□□ -0.05
VPS9D1-203ENST00000563798 SASH3O75995 380 aa14.76□□□□□ -0.05
VPS9D1-203ENST00000563798 MMP7P09237 267 aaPredicted RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms