RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SLC18B1Q6NT16 456 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 RPL13AP3Q6NVV1 102 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 UNQ6494/PRO21346Q6UXR6 183 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ESPNLQ6ZVH7 1005 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ADGRG3Q86Y34 549 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 TIGD4Q8IY51 512 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 MCFD2Q8NI22 146 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 ST8SIA1Q92185 356 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 RPL3LQ92901 407 aaKnown RBP4.9□□□□□ -1.63
VPS13C-209ENST00000560637 CTHRC1Q96CG8 243 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 PDCD1LG2Q9BQ51 273 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 DAPK2Q9UIK4 370 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 B3GNT3Q9Y2A9 372 aa4.9□□□□□ -1.63
VPS13C-209ENST00000560637 IGKV3D-11A0A0A0MRZ8 115 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 A0A1W2PNU3 283 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 FAM230AA0A1W2PPH8 454 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 EIF1BO60739 113 aaKnown RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 GUSBP08236 651 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 KLK2P20151 261 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 APLNRP35414 380 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 OMPP47874 163 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF136P52737 540 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 RPL27P61353 136 aaKnown RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 NCS1P62166 190 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 PMPCAQ10713 525 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ECH1Q13011 328 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF169Q14929 603 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF74Q16587 644 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.89□□□□□ -1.633e-6■■■□□ 15
VPS13C-209ENST00000560637 KLHL26Q53HC5 615 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 SOWAHCQ53LP3 525 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 MTFR2Q6P444 385 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM205Q6UW68 189 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 SYT9Q86SS6 491 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 OR2M3Q8NG83 312 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 CA5BP1Q8WTZ4 195 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 SLC25A43Q8WUT9 341 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF385AQ96PM9 386 aaKnown RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 OR5M11Q96RB7 305 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF700Q9H0M5 742 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 C8orf4Q9NR00 106 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ASF1BQ9NVP2 202 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 MCUBQ9NWR8 336 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 RSL24D1Q9UHA3 163 aaKnown RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 KCNG2Q9UJ96 466 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF223Q9UK11 482 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 SMAD9O15198 467 aaKnown RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 TSPAN2O60636 221 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 RAMP1O60894 148 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 CRYABP02511 175 aaKnown RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF182P17025 639 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 CD82P27701 267 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 MAGEB1P43366 347 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 SELENOVP59797 346 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 Q0VFX4 171 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ST3GAL2Q16842 350 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 NKAPLQ5M9Q1 402 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 SPANXN2Q5MJ10 180 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 KDM4DQ6B0I6 523 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 RNF165Q6ZSG1 346 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF627Q7L945 461 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 SNX29P2Q8IUI4 249 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 RNF113BQ8IZP6 322 aaKnown RBP4.89□□□□□ -1.63
VPS13C-209ENST00000560637 GOLM1Q8NBJ4 401 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 OR8D4Q8NGM9 314 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 OR4Q3Q8NH05 313 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM163Q8TC26 289 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 PIGCQ92535 297 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 GGHQ92820 318 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ITFG2Q969R8 447 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ARHGDIGQ99819 225 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 MND1Q9BWT6 205 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ICAM5Q9UMF0 924 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 ABCA1O95477 2261 aa4.89□□□□□ -1.63
VPS13C-209ENST00000560637 H0YAE9 185 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 M0R1B8 84 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 CCL21O00585 134 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 GPR171O14626 319 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 LRRTM2O43300 516 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 SYT7O43581 403 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 AGFG2O95081 481 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 HPRP00739 348 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 PTHP01270 115 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 APEHP13798 732 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 SRD5A2P31213 254 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ACAA2P42765 397 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF83P51522 516 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 CLDN12P56749 244 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 SPOCK1Q08629 439 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 MFAP5Q13361 173 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF141Q15928 474 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 CTU2Q2VPK5 515 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 FHL5Q5TD97 284 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 MEDAGQ5VYS4 303 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 JMJD6Q6NYC1 403 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 SLC22A25Q6T423 547 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 MEPCEQ7L2J0 689 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 MRPL21Q7Z2W9 205 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ARIH2OSQ8N7S6 290 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ACBD4Q8NC06 268 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms