RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CASC10Q5T4H9 136 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 AGBL2Q5U5Z8 902 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 C9orf135Q5VTT2 229 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 SPECC1LQ69YQ0 1117 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 C22orf42Q6IC83 251 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 OR52W1Q6IF63 320 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 REEP3Q6NUK4 255 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 TMEM53Q6P2H8 277 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 DUX4L9Q6RFH8 374 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 NCCRP1Q6ZVX7 275 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 BZW1Q7L1Q6 419 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 CENPQQ7L2Z9 268 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 SLC16A14Q7RTX9 510 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 KATNAL2Q8IYT4 538 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 CMTM1Q8IZ96 169 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 LYG1Q8N1E2 194 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 CEP112Q8N8E3 955 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ZNF321PQ8N8H1 164 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 OR4A4PQ8NGN8 299 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 OR52E5Q8NH55 327 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 LINC01006Q8NI28 216 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 GPR151Q8TDV0 419 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 SDR42E1Q8WUS8 393 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 CAPSLQ8WWF8 208 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 TMEM158Q8WZ71 300 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 PEX13Q92968 403 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 UCN3Q969E3 161 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 MYDGFQ969H8 173 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 MCUR1Q96AQ8 359 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 KIAA1143Q96AT1 154 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 CCDC126Q96EE4 140 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 PKNOX2Q96KN3 472 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 IMMP1LQ96LU5 166 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ZNF578Q96N58 590 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 TSNARE1Q96NA8 513 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 COL21A1Q96P44 957 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 TGS1Q96RS0 853 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 SH3GL1Q99961 368 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 RIOK2Q9BVS4 552 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 SLC7A5P2Q9GIP4 190 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ROGDIQ9GZN7 287 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 MFFQ9GZY8 342 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ILKAPQ9H0C8 392 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 CLMPQ9H6B4 373 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 SLC25A22Q9H936 323 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 PLGRKTQ9HBL7 147 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 EML4Q9HC35 981 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 KCNJ16Q9NPI9 418 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 AGPAT4Q9NRZ5 378 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 PRR34Q9NV39 138 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 XCL2Q9UBD3 114 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 DUX4Q9UBX2 424 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 TP53TG3Q9ULZ0 132 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ING4Q9UNL4 249 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 NEU3Q9UQ49 428 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 TRAPPC4Q9Y296 219 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 CAB39Q9Y376 341 aaPredicted RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 F11RQ9Y624 299 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 SMAD5-AS1Q9Y6J3 95 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 LRP4O75096 1905 aa1.13□□□□□ -2.23
USP3-209ENST00000558925 ZNFX1Q9P2E3 1918 aaKnown RBP1.13□□□□□ -2.23
USP3-209ENST00000558925 DENND4AQ7Z401 1863 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 PCM1Q15154 2024 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 TRBV9A0A0B4J1U6 114 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 TRAV25A0A0B4J276 109 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 A0A0G2JN53 185 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 TRBV11-1A0A0K0K1C0 115 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 GLYATL1P3A0A0U1RQE8 302 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 PRSS37A4D1T9 235 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 GJE1A6NN92 205 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 TMEM110-MUSTN1A8MSY1 372 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 GOLGA8TH3BQL2 631 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 K7EMT4 169 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 CDC7O00311 574 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 AIM2O14862 343 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 SIVA1O15304 175 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 AIREO43918 545 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 DPM1O60762 260 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 EIF3GO75821 320 aaKnown RBP eCLIP1.12□□□□□ -2.23
USP3-209ENST00000558925 KLF8O95600 359 aaPredicted RBP1.12□□□□□ -2.23
USP3-209ENST00000558925 AIFM1O95831 613 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 INSP01308 110 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 HPNP05981 417 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 STAG3L3P0CL85 134 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 ZNF250P15622 560 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 ZNF17P17021 662 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 RCC1P18754 421 aaPredicted RBP1.12□□□□□ -2.23
USP3-209ENST00000558925 ELK1P19419 428 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 GABRR1P24046 479 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 CCNE1P24864 410 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 STOMP27105 288 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 RRM2P31350 389 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 SLC1A2P43004 574 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 NAMPTP43490 491 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 TFPI2P48307 235 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 RND2P52198 227 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 CRISP3P54108 245 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 NUP107P57740 925 aa1.12□□□□□ -2.23
USP3-209ENST00000558925 RGS8P57771 180 aaPredicted RBP1.12□□□□□ -2.23
USP3-209ENST00000558925 RAB10P61026 200 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms