RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SSR4P51571 173 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 P2RX1P51575 399 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 CRYBA2P53672 197 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 AQP4P55087 323 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 PPP2R2BQ00005 443 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 RBPJQ06330 500 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 FOXL1Q12952 345 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 KEAP1Q14145 624 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 OR1Q1Q15612 314 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ANXA2RQ3ZCQ2 193 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 IQCCQ4KMZ1 466 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 FGD3Q5JSP0 725 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ENTPD8Q5MY95 495 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 PDZK1Q5T2W1 519 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 KDM4DQ6B0I6 523 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 WBP2NLQ6ICG8 309 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 LCN10Q6JVE6 187 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 C1orf94Q6P1W5 598 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ANKRD16Q6P6B7 361 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 TTC33Q6PID6 262 aaPredicted RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 KIRREL2Q6UWL6 708 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 CLEC18BQ6UXF7 455 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 NPSR1Q6W5P4 371 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ZNF730Q6ZMV8 503 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ZNF836Q6ZNA1 936 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 SHISA6Q6ZSJ9 500 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 LANCL3Q6ZV70 420 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 TIPARPQ7Z3E1 657 aaKnown RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 C9orf40Q8IXQ3 194 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 C8orf59Q8N0T1 100 aaPredicted RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 PARP8Q8N3A8 854 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 CLIP4Q8N3C7 705 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 LNX2Q8N448 690 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 MARVELD2Q8N4S9 558 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 TMEM156Q8N614 296 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 FAM86B1Q8N7N1 296 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 CLEC1AQ8NC01 280 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 CLEC18CQ8NCF0 446 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 OR11G2Q8NGC1 345 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 OR6T1Q8NGN1 323 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 B4GALNT2Q8NHY0 566 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ZNF563Q8TA94 476 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 PIGXQ8TBF5 258 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ADAMTS16Q8TE57 1224 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 APOBEC4Q8WW27 367 aaKnown RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 TRUB1Q8WWH5 349 aaKnown RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 ROBO4Q8WZ75 1007 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ZG16BQ96DA0 208 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 NXPE2Q96DL1 559 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 SPACA9Q96E40 222 aaPredicted RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 RRNAD1Q96FB5 475 aaKnown RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 SLC41A3Q96GZ6 507 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 ADOQ96SZ5 270 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 SLC29A1Q99808 456 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 WDR77Q9BQA1 342 aaPredicted RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 DGCR6LQ9BY27 220 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 SLC19A3Q9BZV2 496 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 UCK2Q9BZX2 261 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 KCNK15Q9H427 330 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 PTGES2Q9H7Z7 377 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 LIN28AQ9H9Z2 209 aaKnown RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 ZBTB20Q9HC78 741 aaPredicted RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 CPNE5Q9HCH3 593 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 P4HTMQ9NXG6 502 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 NLKQ9UBE8 527 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 MED31Q9Y3C7 131 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 HS3ST3B1Q9Y662 390 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 AP4B1Q9Y6B7 739 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 U3KQV3 271 aa4.61□□□□□ -1.67
LDLR-209ENST00000558528 GOLGA4Q13439 2230 aaKnown RBP4.61□□□□□ -1.67
LDLR-209ENST00000558528 SPG11Q96JI7 2443 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 A0A087WZY1 265 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 IGHV3-20A0A0C4DH32 117 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 LOC100130705A0A1B0GUX0 176 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SH3PXD2BA1X283 911 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 TRABD2BA6NFA1 517 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 CPSF4LA6NMK7 179 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 FAM157AC9JC47 383 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 PDLIM1O00151 329 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 WWP2O00308 870 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SOCS2O14508 198 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SOCS6O14544 535 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 MSTNO14793 375 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 OR2T1O43869 369 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 FADS1O60427 444 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 CDC40O60508 579 aaKnown RBP eCLIP4.6□□□□□ -1.67
LDLR-209ENST00000558528 MRPS14O60783 128 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 CNOT3O75175 753 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 DIRAS1O95057 198 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 SCAF4O95104 1147 aaKnown RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 RCBTB2O95199 551 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 TNFAIP8O95379 198 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 ANGPTL1O95841 491 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 BCL10O95999 233 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 MT-ND1P03886 318 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 HMGN1P05114 100 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 UBTFL6P0CB48 400 aaPredicted RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 ITGAMP11215 1152 aa4.6□□□□□ -1.67
LDLR-209ENST00000558528 JUNBP17275 347 aaPredicted RBP4.6□□□□□ -1.67
LDLR-209ENST00000558528 BMP7P18075 431 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms