RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 MCHR2Q969V1 340 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF570Q96NI8 536 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 GPX7Q96SL4 187 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-228ENST00000557302 KCNK17Q96T54 332 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 FOXB1Q99853 325 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 NELFAQ9H3P2 528 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 VNN3Q9NY84 501 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-228ENST00000557302 GRHPRQ9UBQ7 328 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 ADAM18Q9Y3Q7 739 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 RNF115Q9Y4L5 304 aa11.89□□□□□ -0.51
SHMT2-228ENST00000557302 CSMD2Q7Z408 3487 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 DPRXA6NFQ7 191 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 M0R1B8 84 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 XKRYO14609 159 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 B4GALT1P15291 398 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 PAX7P23759 505 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 CAPZA2P47755 286 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 FXYD6P3P58550 94 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 MYBPC1Q00872 1141 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 BSPH1Q075Z2 132 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 MICAQ29983 383 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 GPR139Q6DWJ6 353 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF770Q6IQ21 691 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-228ENST00000557302 TMEM108Q6UXF1 575 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 THSD4Q6ZMP0 1018 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 DPY19L2P2Q6ZN68 376 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF704Q6ZNC4 412 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF627Q7L945 461 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 CDH24Q86UP0 819 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 ARIH2OSQ8N7S6 290 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 PAPD5Q8NDF8 572 aaKnown RBP11.88□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF519Q8TB69 540 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 FNDC8Q8TC99 324 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 SLCO4A1Q96BD0 722 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 RBP7Q96R05 134 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 TMEM204Q9BSN7 226 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 C1QTNF6Q9BXI9 259 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 OR52D1Q9H346 318 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 PLEKHF2Q9H8W4 249 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 MOV10Q9HCE1 1003 aaKnown RBP11.88□□□□□ -0.51
SHMT2-228ENST00000557302 NRIP3Q9NQ35 241 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 IL20RAQ9UHF4 553 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 EDARQ9UNE0 448 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 ROS1P08922 2347 aa11.88□□□□□ -0.51
SHMT2-228ENST00000557302 ANKRD17O75179 2603 aaKnown RBP11.87□□□□□ -0.51
SHMT2-228ENST00000557302 TEX13CA0A0J9YWL9 993 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 ARHGEF9O43307 516 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 ENTPD5O75356 428 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 E2F6O75461 281 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 GASTP01350 101 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 PTAFRP25105 342 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 SDHAP31040 664 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 SLC6A6P31641 620 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF84P51523 738 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 RPS6KA3P51812 740 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF133P52736 654 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-228ENST00000557302 TUBA1BP68363 451 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 TUBA4AP68366 448 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 FMODQ06828 376 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 RFX4Q33E94 735 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 MESTQ5EB52 335 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 C10orf128Q5T292 105 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 LCE2DQ5TA82 110 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-228ENST00000557302 ZNF620Q6ZNG0 422 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 TUBA1AQ71U36 451 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 FAM122BQ7Z309 247 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 AQP11Q8NBQ7 271 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 OR10G2Q8NGC3 310 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 GIPC3Q8TF64 312 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 NANOS1Q8WY41 292 aaKnown RBP11.87□□□□□ -0.51
SHMT2-228ENST00000557302 NRGNQ92686 78 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 UTP4Q969X6 686 aaKnown RBP11.87□□□□□ -0.51
SHMT2-228ENST00000557302 NMD3Q96D46 503 aaKnown RBP11.87□□□□□ -0.51
SHMT2-228ENST00000557302 Q96M85 177 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 UBTD1Q9HAC8 227 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 SMURF2Q9HAU4 748 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 TMEM38BQ9NVV0 291 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 DNAJB9Q9UBS3 223 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 IER3IP1Q9Y5U9 82 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 CDH10Q9Y6N8 788 aa11.87□□□□□ -0.51
SHMT2-228ENST00000557302 CELSR1Q9NYQ6 3014 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 CCDC168Q8NDH2 2452 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 CADP27708 2225 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 ARRDC5A6NEK1 342 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 H7C1C5 153 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 ABCD4O14678 606 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 DEAF1O75398 565 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-228ENST00000557302 FARS2O95363 451 aaKnown RBP11.86□□□□□ -0.51
SHMT2-228ENST00000557302 SLC2A10O95528 541 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 PPP1R3DO95685 299 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 PLAUP00749 431 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 APEHP13798 732 aaKnown RBP11.86□□□□□ -0.51
SHMT2-228ENST00000557302 GSTM3P21266 225 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 CD40P25942 277 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 IST1P53990 364 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 LCN6P62502 163 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 KRR1Q13601 381 aaKnown RBP11.86□□□□□ -0.51
SHMT2-228ENST00000557302 CCNIQ14094 377 aa11.86□□□□□ -0.51
SHMT2-228ENST00000557302 THEM4Q5T1C6 240 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms