RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 RAB1BQ9H0U4 201 aa8.62□□□□□ -1.03
SCFD1-220ENST00000556486 WDR55Q9H6Y2 383 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-220ENST00000556486 SEC61A2Q9H9S3 476 aa8.62□□□□□ -1.03
SCFD1-220ENST00000556486 HIF1ANQ9NWT6 349 aa8.62□□□□□ -1.03
SCFD1-220ENST00000556486 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-220ENST00000556486 GMEB1Q9Y692 573 aa8.62□□□□□ -1.03
SCFD1-220ENST00000556486 TRIM77I1YAP6 450 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 OR2T1O43869 369 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 BCHEP06276 602 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 IGFBP1P08833 259 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-220ENST00000556486 DBHP09172 617 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 ETS2P15036 469 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 ZNF43P17038 809 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 HOXB9P17482 250 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-220ENST00000556486 CALCRP30988 508 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 ARR3P36575 388 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 CRATP43155 626 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 MRPL19P49406 292 aaKnown RBP8.61□□□□□ -1.03
SCFD1-220ENST00000556486 EVX1P49640 407 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 DVL1P1P54792 670 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-220ENST00000556486 NME5P56597 212 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 TUBA1BP68363 451 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 TUBA4AP68366 448 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 ROR2Q01974 943 aaKnown RBP8.61□□□□□ -1.03
SCFD1-220ENST00000556486 FADDQ13158 208 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 FAM69AQ5T7M9 428 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 NIPAL3Q6P499 406 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 UGT2A3Q6UWM9 527 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 TUBA1AQ71U36 451 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 NET1Q7Z628 596 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-220ENST00000556486 SERPINA11Q86U17 422 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 GLCCI1Q86VQ1 547 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 TMEM123Q8N131 208 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 ZNF786Q8N393 782 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 OR6S1Q8NH40 331 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 TAF15Q92804 592 aaKnown RBP eCLIP8.61□□□□□ -1.03
SCFD1-220ENST00000556486 VPS33AQ96AX1 596 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 TRIM44Q96DX7 344 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-220ENST00000556486 MISP3Q96FF7 219 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 TMEM19Q96HH6 336 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 ITCHQ96J02 903 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 MPP4Q96JB8 637 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 ANKRD27Q96NW4 1050 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 OXGR1Q96P68 337 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 TPK1Q9H3S4 243 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 RMND5AQ9H871 391 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 A4GALTQ9NPC4 353 aa8.61□□□□□ -1.03
SCFD1-220ENST00000556486 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.61□□□□□ -1.03
SCFD1-220ENST00000556486 LOC105371242A0A075B767 164 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 IGHV2OR16-5A0A0B4J2B6 119 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 TMEM129A0AVI4 362 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 TMEM247A6NEH6 219 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 H3BUI4 141 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 NR5A2O00482 541 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 WNT9BO14905 357 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 TRAF3IP2O43734 574 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-220ENST00000556486 ERCC1P07992 297 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-220ENST00000556486 ADRA2CP18825 462 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 NCF2P19878 526 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-220ENST00000556486 FSTP19883 344 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 NPR2P20594 1047 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 PRKAR1BP31321 381 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 HILS1P60008 231 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 RIN1Q13671 783 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 BLMHQ13867 455 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 RGNQ15493 299 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 FAM91A1Q658Y4 838 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 HIST2H2BDQ6DRA6 164 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 FAHD2BQ6P2I3 314 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-220ENST00000556486 NHLRC1Q6VVB1 395 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 MYPOPQ86VE0 399 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-220ENST00000556486 PIK3C3Q8NEB9 887 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 DNAJA4Q8WW22 397 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-220ENST00000556486 C22orf15Q8WYQ4 148 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 GTF2H4Q92759 462 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 KTI12Q96EK9 354 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-220ENST00000556486 FAHD2AQ96GK7 314 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 SLC41A3Q96GZ6 507 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 LRR1Q96L50 414 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 SLC6A7Q99884 636 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 RSPO3Q9BXY4 272 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-220ENST00000556486 DENND2DQ9H6A0 471 aaPredicted RBP8.6□□□□□ -1.03
SCFD1-220ENST00000556486 GPR35Q9HC97 309 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 ESM1Q9NQ30 184 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 B3GNT2Q9NY97 397 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 RAB21Q9UL25 225 aa8.6□□□□□ -1.03
SCFD1-220ENST00000556486 CMYA5Q8N3K9 4069 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 IGKV1D-42A0A075B6H8 117 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 A0A1W2PPL8 197 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 ZNF503-AS2A6NEH8 195 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 ZNF99A8MXY4 864 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-220ENST00000556486 hCG_2039718K7EN88 272 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 AIM2O14862 343 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 AKAP8O43823 692 aaKnown RBP8.59□□□□□ -1.03
SCFD1-220ENST00000556486 PSPNO60542 156 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 SLC43A1O75387 559 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 ANP32DO95626 131 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 ZFP36P26651 326 aaKnown RBP8.59□□□□□ -1.03
SCFD1-220ENST00000556486 THBS4P35443 961 aa8.59□□□□□ -1.03
SCFD1-220ENST00000556486 RPS5P46782 204 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms