RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ZNF562Q6V9R5 426 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 CCDC80Q76M96 950 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 FAM72BQ86X60 149 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 CCDC50Q8IVM0 306 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 CCDC65Q8IXS2 484 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 PRSS58Q8IYP2 241 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-208ENST00000551691 OR11G2Q8NGC1 345 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 OR52B6Q8NGF0 335 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 BRSK1Q8TDC3 778 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 PCNPQ8WW12 178 aaKnown RBP3.16□□□□□ -1.9
LIMA1-208ENST00000551691 HSFY1Q96LI6 401 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 TMEM43Q9BTV4 400 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 BEX2Q9BXY8 128 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 HIPK2Q9H2X6 1198 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 ALG9Q9H6U8 611 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 UCK1Q9HA47 277 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 CALHM2Q9HA72 323 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 NRN1Q9NPD7 142 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 ACP6Q9NPH0 428 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 FAM114A2Q9NRY5 505 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 ZFP57Q9NU63 452 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 DCAF13Q9NV06 445 aaKnown RBP3.16□□□□□ -1.9
LIMA1-208ENST00000551691 HRASLS2Q9NWW9 162 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 RAB20Q9NX57 234 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 AIPL1Q9NZN9 384 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 LCMT1Q9UIC8 334 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 MGAT4AQ9UM21 535 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 RYR2Q92736 4967 aa3.16□□□□□ -1.9
LIMA1-208ENST00000551691 CR1P17927 2039 aa3.15□□□□□ -1.9
LIMA1-208ENST00000551691 HEATR5AQ86XA9 2040 aa3.15□□□□□ -1.9
LIMA1-208ENST00000551691 IGLV3-10A0A075B6K4 115 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 A0A1W2PR80 420 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 OR6C74A6NCV1 312 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 FAM74A7A6NL05 159 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 OR5K4A6NMS3 321 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 PDZK1P1A8MUH7 402 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 E7EQ34 232 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 P2RY10O00398 339 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 CASQ2O14958 399 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 POLR2DO15514 142 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 ZSCAN12O43309 604 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 TNFSF12O43508 249 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 CD5LO43866 347 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 CDC40O60508 579 aaKnown RBP eCLIP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 ECDO95905 644 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 FHP07954 510 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 EDNRAP25101 427 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 GTF2H1P32780 548 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 LONP1P36776 959 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 TAGLN2P37802 199 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 GRIA1P42261 906 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 RPL34P49207 117 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 EMDP50402 254 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 SUCLG1P53597 346 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 ERVK-16P61578 105 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 RPL23AP62750 156 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 DCDP81605 110 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 NAAAQ02083 359 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 BDH1Q02338 343 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 ZP4Q12836 540 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 KIAA0141Q14154 515 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 FASTKQ14296 549 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 GANABQ14697 944 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 PPP1R7Q15435 360 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 FAM189A2Q15884 450 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 KNOP1Q1ED39 458 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 DEFB110Q30KQ9 67 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 CCDC14Q49A88 953 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 NKAIN1Q4KMZ8 207 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 FAM74A3Q4VXF1 159 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 TFDP3Q5H9I0 405 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 RWDD4Q6NW29 188 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 NEPROQ6NW34 567 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 OR4N5Q8IXE1 308 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 C12orf56Q8IXR9 622 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 LRRC75A-AS1Q8N1F1 130 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 OR1K1Q8NGR3 316 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 SGMS2Q8NHU3 365 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 FAM57AQ8TBR7 257 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 SLC22A8Q8TCC7 542 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 HCAR2Q8TDS4 363 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 FAM222BQ8WU58 562 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 RASD2Q96D21 266 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 SLC41A3Q96GZ6 507 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 COX14Q96I36 57 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 LYZL4Q96KX0 146 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 RBM14Q96PK6 669 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 TNFRSF13CQ96RJ3 184 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 USP28Q96RU2 1077 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 CPXM1Q96SM3 734 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 RIOK2Q9BVS4 552 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 TSSK1BQ9BXA7 367 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 CLEC7AQ9BXN2 247 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 ZYG11BQ9C0D3 744 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 NXF5Q9H1B4 397 aaKnown RBP3.15□□□□□ -1.91
LIMA1-208ENST00000551691 BLZF1Q9H2G9 400 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 FN3KRPQ9HA64 309 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 FAM60AQ9NP50 221 aa3.15□□□□□ -1.91
LIMA1-208ENST00000551691 GNG12Q9UBI6 72 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms