RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 OCLNQ16625 522 aa14.38□□□□□ -0.11
VPS29-204ENST00000548259 TSTQ16762 297 aaKnown RBP14.38□□□□□ -0.11
VPS29-204ENST00000548259 SKA3Q8IX90 412 aa14.38□□□□□ -0.11
VPS29-204ENST00000548259 DUX5Q96PT3 197 aa14.38□□□□□ -0.11
VPS29-204ENST00000548259 SPATA5L1Q9BVQ7 753 aa14.38□□□□□ -0.11
VPS29-204ENST00000548259 MEAF6Q9HAF1 191 aa14.38□□□□□ -0.11
VPS29-204ENST00000548259 TMEM27Q9HBJ8 222 aa14.38□□□□□ -0.11
VPS29-204ENST00000548259 BCL2L10Q9HD36 194 aa14.38□□□□□ -0.11
VPS29-204ENST00000548259 CHST2Q9Y4C5 530 aa14.38□□□□□ -0.11
VPS29-204ENST00000548259 AUP1Q9Y679 476 aa14.38□□□□□ -0.11
VPS29-204ENST00000548259 WDR91A4D1P6 747 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 CLDN34H7C241 214 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 PATE4P0C8F1 98 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 ZFP36P26651 326 aaKnown RBP14.37□□□□□ -0.11
VPS29-204ENST00000548259 GCH1P30793 250 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 PRKAR1BP31321 381 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 APLNRP35414 380 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 SLC1A6P48664 564 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 MVDP53602 400 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 KRT73Q86Y46 540 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 ITCHQ96J02 903 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 PKNOX2Q96KN3 472 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 ROPN1BQ9BZX4 212 aaPredicted RBP14.37□□□□□ -0.11
VPS29-204ENST00000548259 ROPN1Q9HAT0 212 aaPredicted RBP14.37□□□□□ -0.11
VPS29-204ENST00000548259 CYSLTR2Q9NS75 346 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 GLTPQ9NZD2 209 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 TESQ9UGI8 421 aaKnown RBP14.37□□□□□ -0.11
VPS29-204ENST00000548259 SLC13A4Q9UKG4 626 aa14.37□□□□□ -0.11
VPS29-204ENST00000548259 IGKV1D-42A0A075B6H8 117 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 A0A1B0GUS0 222 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 PLPP3O14495 311 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 MGRN1O60291 552 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 MT-ATP6P00846 226 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 IGHV3-13P01766 116 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 ETS2P15036 469 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 IL12AP29459 219 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 LIPAP38571 399 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 ETV4P43268 484 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 BIDP55957 195 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 ZNF718Q3SXZ3 478 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 ZMAT1Q5H9K5 638 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 C6orf10Q5SRN2 563 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 ZNF771Q7L3S4 317 aaPredicted RBP14.36□□□□□ -0.11
VPS29-204ENST00000548259 SLC16A14Q7RTX9 510 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 SPICQ8N5J4 248 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 OR6X1Q8NH79 312 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 ZNF566Q969W8 418 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 TSPAN32Q96QS1 320 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 MS4A7Q9GZW8 240 aaPredicted RBP14.36□□□□□ -0.11
VPS29-204ENST00000548259 KCNN2Q9H2S1 579 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 A4GALTQ9NPC4 353 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 TCF7L2Q9NQB0 619 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 TMEM38BQ9NVV0 291 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 EIF3KQ9UBQ5 218 aaKnown RBP14.36□□□□□ -0.11
VPS29-204ENST00000548259 ZNF69Q9UC07 566 aa14.36□□□□□ -0.11
VPS29-204ENST00000548259 PURGQ9UJV8 347 aaKnown RBP14.36□□□□□ -0.11
VPS29-204ENST00000548259 WNK2Q9Y3S1 2297 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 SPRY3O43610 288 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 TYROBPO43914 113 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 SLC22A3O75751 556 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 VIMP08670 466 aaKnown RBP14.35□□□□□ -0.11
VPS29-204ENST00000548259 ALDOCP09972 364 aaKnown RBP14.35□□□□□ -0.11
VPS29-204ENST00000548259 ADORA3P0DMS8 318 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 CCL2P13500 99 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 IDO1P14902 403 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 HSF2Q03933 536 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 GLO1Q04760 184 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 NRN1LQ496H8 165 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 MSANTD1Q6ZTZ1 278 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 C1orf174Q8IYL3 243 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 KLHL36Q8N4N3 616 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 RBM15BQ8NDT2 890 aaKnown RBP14.35□□□□□ -0.11
VPS29-204ENST00000548259 OR1J1Q8NGS3 322 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 OR5J2Q8NH18 312 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 TMEM54Q969K7 222 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 DIRC2Q96SL1 478 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 SH3GL3Q99963 347 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 C1QTNF5Q9BXJ0 243 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 CGGBP1Q9UFW8 167 aaPredicted RBP14.35□□□□□ -0.11
VPS29-204ENST00000548259 HAO1Q9UJM8 370 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 CACNG2Q9Y698 323 aa14.35□□□□□ -0.11
VPS29-204ENST00000548259 TRPC5OSA6NMA1 111 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 DHHO43323 396 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 MFN2O95140 757 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 IGHMP01871 453 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 BGLAPP02818 100 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 MAKP20794 623 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 ZNF84P51523 738 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 ERVS71-1P61550 626 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 ZNF154Q13106 437 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 FADDQ13158 208 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 STX3Q13277 289 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 CEP85LQ5SZL2 805 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 SWT1Q5T5J6 900 aaKnown RBP14.34□□□□□ -0.11
VPS29-204ENST00000548259 C17orf107Q6ZR85 190 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 PAQR4Q8N4S7 273 aaPredicted RBP14.34□□□□□ -0.11
VPS29-204ENST00000548259 DEFB108BQ8NET1 73 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 BHLHE22Q8NFJ8 381 aaPredicted RBP14.34□□□□□ -0.11
VPS29-204ENST00000548259 OR4K5Q8NGD3 323 aa14.34□□□□□ -0.11
VPS29-204ENST00000548259 FGFBP3Q8TAT2 258 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms