RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SH3BGRP55822 239 aaPredicted RBP14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 CD47Q08722 323 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 MELKQ14680 651 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 SLC35F1Q5T1Q4 408 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 NIPAL3Q6P499 406 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 TUSC5Q8IXB3 177 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 C9orf106Q8NAJ2 232 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 SDR9C7Q8NEX9 313 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 OR6N1Q8NGY5 312 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 HDAC2Q92769 488 aaKnown RBP14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 RELTQ969Z4 430 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 TXNDC15Q96J42 360 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 NMNAT3Q96T66 252 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 WACQ9BTA9 647 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 HINT3Q9NQE9 182 aaKnown RBP14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 MALT1Q9UDY8 824 aa14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 ZNF629Q9UEG4 869 aaPredicted RBP14.2□□□□□ -0.14
PRPF40A-212ENST00000545856 HIVEP3Q5T1R4 2406 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 A0A1B0GUH1 482 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 HRGP04196 525 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 TMIGD3P0DMS9 266 aaPredicted RBP14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 GLI4P10075 376 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 CTSSP25774 331 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 HTR1FP30939 366 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 GLO1Q04760 184 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 CDK5R2Q13319 367 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 RBM48Q5RL73 367 aaKnown RBP14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 CPOQ8IVL8 374 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 ZNF100Q8IYN0 542 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 GPR137CQ8N3F9 429 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 NR1H4Q96RI1 486 aaPredicted RBP14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 IL4I1Q96RQ9 567 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 DMRTA2Q96SC8 542 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 MYCBPQ99417 103 aaPredicted RBP14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 SYT4Q9H2B2 425 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 PIGMQ9H3S5 423 aa14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 RPL36Q9Y3U8 105 aaKnown RBP14.19□□□□□ -0.14
PRPF40A-212ENST00000545856 MYO18BQ8IUG5 2567 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 OR6C68A6NDL8 312 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 MRPS14O60783 128 aaKnown RBP14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 KHDRBS3O75525 346 aaKnown RBP14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 CLIC3O95833 236 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 PIPP12273 146 aaPredicted RBP14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 SELENOPP49908 381 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 ZNF84P51523 738 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 CAMK2DQ13557 499 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 GGTLC2Q14390 218 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 PLBD1Q6P4A8 553 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 SEM1Q6ZVN7 128 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 CNBD2Q96M20 576 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 MNTQ99583 582 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 CCNB1IP1Q9NPC3 277 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 PLSCR4Q9NRQ2 329 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 MRPS18AQ9NVS2 196 aaKnown RBP14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 CNOT2Q9NZN8 540 aaKnown RBP14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 KCNG2Q9UJ96 466 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 MEMO1Q9Y316 297 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 PCDHGB1Q9Y5G3 927 aa14.18□□□□□ -0.14
PRPF40A-212ENST00000545856 NCOA6Q14686 2063 aaPredicted RBP14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 ZNF587BE7ETH6 402 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 WBP4O75554 376 aaKnown RBP14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 GLCEO94923 617 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 SLC2A10O95528 541 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 SPI1P17947 270 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 SLC2A5P22732 501 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 GUCA1AP43080 201 aaPredicted RBP14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 KIR2DL2P43627 348 aaPredicted RBP14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 CDH11P55287 796 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 C6orf141Q5SZD1 244 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 FBXW9Q5XUX1 488 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 FOXL2NBQ6ZUU3 175 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 MEPCEQ7L2J0 689 aaKnown RBP14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 ZNF627Q7L945 461 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 EGFL6Q8IUX8 553 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 APH1BQ8WW43 257 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 IPCEF1Q8WWN9 437 aaPredicted RBP14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 PTP4A1Q93096 173 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 ZNF582Q96NG8 517 aaPredicted RBP14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 EMC6Q9BV81 110 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 ULBP2Q9BZM5 246 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 RPRD1BQ9NQG5 326 aaKnown RBP14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 RASSF1Q9NS23 344 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 SCN3BQ9NY72 215 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 TINAGQ9UJW2 476 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 B9D1Q9UPM9 204 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 TPRKBQ9Y3C4 175 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 PCNX1Q96RV3 2341 aa14.17□□□□□ -0.14
PRPF40A-212ENST00000545856 IGLV1-36A0A0B4J1U3 117 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 EFCAB10A6NFE3 127 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 EIF4E1BA6NMX2 242 aaKnown RBP14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 DVL2O14641 736 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 TNFSF13O75888 250 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 NPR2P20594 1047 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 PAX7P23759 505 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 FMO3P31513 532 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 MTNR1AP48039 350 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 GABARAPL2P60520 117 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 RUNX1T1Q06455 604 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 RAB40BQ12829 278 aa14.16□□□□□ -0.14
PRPF40A-212ENST00000545856 KLHL22Q53GT1 634 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms