RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 NRN1LQ496H8 165 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 SAMD4BQ5PRF9 694 aaKnown RBP12.31□□□□□ -0.44
USP28-209ENST00000540925 C10orf128Q5T292 105 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 TBPL2Q6SJ96 375 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 TMPRSS11FQ6ZWK6 438 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 BIVMQ86UB2 503 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 FBXL14Q8N1E6 418 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 NOXO1Q8NFA2 376 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 NUP37Q8NFH4 326 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 TRMT61AQ96FX7 289 aaKnown RBP12.31□□□□□ -0.44
USP28-209ENST00000540925 ZNF347Q96SE7 839 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 KCNK17Q96T54 332 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 CDRT15Q96T59 188 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 SMR3AQ99954 134 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 BDH2Q9BUT1 245 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 CACNG6Q9BXT2 260 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 TXNIPQ9H3M7 391 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 DENND2DQ9H6A0 471 aaPredicted RBP12.31□□□□□ -0.44
USP28-209ENST00000540925 CA10Q9NS85 328 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 TMEM38BQ9NVV0 291 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 SAMD4AQ9UPU9 718 aaKnown RBP12.31□□□□□ -0.44
USP28-209ENST00000540925 ATP23Q9Y6H3 246 aa12.31□□□□□ -0.44
USP28-209ENST00000540925 CDC42EP2O14613 210 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 ARPC2O15144 300 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 PDE5AO76074 875 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 QDPRP09417 244 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 RHCEP18577 417 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 LIMS1P48059 325 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 SLC9A3P48764 834 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 IDH3GP51553 393 aaPredicted RBP12.3□□□□□ -0.44
USP28-209ENST00000540925 TAF11Q15544 211 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 ADIPOQQ15848 244 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 GSG1Q2KHT4 349 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 ALG10Q5BKT4 473 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 HDDC2Q7Z4H3 204 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 MEX3DQ86XN8 651 aaKnown RBP12.3□□□□□ -0.44
USP28-209ENST00000540925 ZNF584Q8IVC4 421 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 SKA3Q8IX90 412 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 SLC22A24Q8N4F4 322 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 IL17RDQ8NFM7 739 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 OR4F15Q8NGB8 312 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 FGFBP3Q8TAT2 258 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 ZNF519Q8TB69 540 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 HDAC2Q92769 488 aaKnown RBP12.3□□□□□ -0.44
USP28-209ENST00000540925 MCHR2Q969V1 340 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 GTPBP3Q969Y2 492 aaKnown RBP12.3□□□□□ -0.44
USP28-209ENST00000540925 SMURF2Q9HAU4 748 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 MAGEL2Q9UJ55 1249 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 UGT2A1Q9Y4X1 527 aa12.3□□□□□ -0.44
USP28-209ENST00000540925 TRAV27A0A087WT01 109 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 IGKV1D-43A0A0B4J1Z2 117 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 T-ENOLP0DO92 83 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 ZNF35P13682 527 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 TCN1P20061 433 aaPredicted RBP12.29□□□□□ -0.44
USP28-209ENST00000540925 MSX2P35548 267 aaPredicted RBP12.29□□□□□ -0.44
USP28-209ENST00000540925 ACVR1BP36896 505 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 TNK1Q13470 666 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 SEC23BQ15437 767 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 EFNB3Q15768 340 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 CLEC12BQ2HXU8 276 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 GKAP1Q5VSY0 366 aaPredicted RBP12.29□□□□□ -0.44
USP28-209ENST00000540925 PODNL1Q6PEZ8 512 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 C16orf89Q6UX73 402 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 ZNF730Q6ZMV8 503 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 CYP4Z1Q86W10 505 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 DEFB107AQ8IZN7 70 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 OR13C2Q8NGS9 318 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 MS4A3Q96HJ5 214 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 PYURFQ96I23 114 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 TSPAN32Q96QS1 320 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 TNFRSF13CQ96RJ3 184 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 ZNF442Q9H7R0 627 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 BARX1Q9HBU1 254 aaPredicted RBP12.29□□□□□ -0.44
USP28-209ENST00000540925 NDE1Q9NXR1 346 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 STX18Q9P2W9 335 aaKnown RBP12.29□□□□□ -0.44
USP28-209ENST00000540925 TLN2Q9Y4G6 2542 aa12.29□□□□□ -0.44
USP28-209ENST00000540925 TRBV4-1A0A0J9YWV2 114 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 EFCAB9A8MZ26 197 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 MCIDASD6RGH6 385 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 PTP4A3O75365 173 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 UBL3O95164 117 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 H1F0P07305 194 aaKnown RBP12.28□□□□□ -0.44
USP28-209ENST00000540925 OR8G3PP0DMU2 310 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 SAGP10523 405 aaPredicted RBP12.28□□□□□ -0.44
USP28-209ENST00000540925 GPR4P46093 362 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 OMPP47874 163 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 GIPRP48546 466 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 MNAT1P51948 309 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 CLRN1P58418 232 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 RPL27P61353 136 aaKnown RBP12.28□□□□□ -0.44
USP28-209ENST00000540925 RAB1AP62820 205 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 NPRL3Q12980 569 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 SLC25A47Q6Q0C1 308 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 OAFQ86UD1 273 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 SYT14Q8NB59 555 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 OR51A7Q8NH64 312 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 NANOS1Q8WY41 292 aaKnown RBP12.28□□□□□ -0.44
USP28-209ENST00000540925 NABP1Q96AH0 204 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 KCNS3Q9BQ31 491 aa12.28□□□□□ -0.44
USP28-209ENST00000540925 ALG12Q9BV10 488 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms