RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 GIFP27352 417 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 RBM34P42696 430 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 CHN2P52757 468 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 CLRN1P58418 232 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 KLF10Q13118 480 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 RAB39AQ14964 217 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 REP15Q6BDI9 236 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 LRFN4Q6PJG9 635 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 HDDC2Q7Z4H3 204 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 DPPA2Q7Z7J5 298 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 ZNF786Q8N393 782 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 PCYOX1LQ8NBM8 494 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 MRPL37Q9BZE1 423 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 POLR2J2Q9GZM3 115 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 POLR2J3Q9H1A7 115 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 TPK1Q9H3S4 243 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 MS4A5Q9H3V2 200 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 MEPEQ9NQ76 525 aaPredicted RBP13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 FGFR1OP2Q9NVK5 253 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 GID8Q9NWU2 228 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 REV1Q9UBZ9 1251 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 SLC7A8Q9UHI5 535 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 CUBNO60494 3623 aa13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLSTN3-204ENST00000535313 TGFAP01135 160 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 QDPRP09417 244 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 PATE4P0C8F1 98 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 PGA4P0DJD7 388 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 PGA3P0DJD8 388 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 FUT1P19526 365 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 TNFRSF1BP20333 461 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 HNF1AP20823 631 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 IGFBP5P24593 272 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 RPL18Q07020 188 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 SF3A3Q12874 501 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 TMEM53Q6P2H8 277 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 ARIH2OSQ8N7S6 290 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 SGTBQ96EQ0 304 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 SH3GL3Q99963 347 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 SYT3Q9BQG1 590 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 RNF121Q9H920 327 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 SAR1AQ9NR31 198 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 FAM53CQ9NYF3 392 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 RIMS3Q9UJD0 308 aa13.94□□□□□ -0.18
CLSTN3-204ENST00000535313 LOC100653049A0A140TA62 436 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 LRP5LA4QPB2 252 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 SHOX2O60902 331 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 KRT34O76011 436 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 OR7A10O76100 309 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 IGF2P01344 180 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 F13BP05160 661 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 IGFBP1P08833 259 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 SRD5A1P18405 259 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 DAP3P51398 398 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 ZNF84P51523 738 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 UGT2B15P54855 530 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 PIN1Q13526 163 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 FXNQ16595 210 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 MSMPQ1L6U9 139 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 SLC36A2Q495M3 483 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 FAM120AOSQ5T036 256 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 SLC16A14Q7RTX9 510 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 ZNF584Q8IVC4 421 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 NKAIN4Q8IVV8 208 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 SLC30A7Q8NEW0 376 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 OR4K5Q8NGD3 323 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 PFN4Q8NHR9 129 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 FGFBP3Q8TAT2 258 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 TMEM255BQ8WV15 326 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 C10orf82Q8WW14 230 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 TMEM239Q8WW34 195 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 HPS1Q92902 700 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 MCHR2Q969V1 340 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 ZNF583Q96ND8 569 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 INIPQ9NRY2 104 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 STX18Q9P2W9 335 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 DUSP13Q9UII6 198 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 MED31Q9Y3C7 131 aa13.93□□□□□ -0.18
CLSTN3-204ENST00000535313 A0A1W2PPW3 197 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 SLC22A23A1A5C7 686 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 FAM220BPB1ANY3 271 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 CENPBD1B2RD01 187 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 PHF1O43189 567 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 PTHP01270 115 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 TACSTD2P09758 323 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 THRBP10828 461 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 APEX1P27695 318 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 IFNA8P32881 189 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 AQP2P41181 271 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 ALDH3B1P43353 468 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 OR1E2P47887 323 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 SELENOVP59797 346 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 GUCY1A3Q02108 690 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 RUNX1T1Q06455 604 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 NRN1LQ496H8 165 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 LRRC23Q53EV4 343 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 CYBRD1Q53TN4 286 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 SYT14Q8NB59 555 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 NOXO1Q8NFA2 376 aa13.92□□□□□ -0.18
CLSTN3-204ENST00000535313 OR2T12Q8NG77 320 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms