RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SPRYD4Q8WW59 207 aaPredicted RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 SMPDL3BQ92485 455 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 KISS1RQ969F8 398 aaPredicted RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 SPACA9Q96E40 222 aaPredicted RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 SENP5Q96HI0 755 aaPredicted RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 ART5Q96L15 291 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 SLC38A2Q96QD8 506 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 SECISBP2Q96T21 854 aaKnown RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 TBX5Q99593 518 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 CCDC32Q9BV29 185 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 PPIL3Q9H2H8 161 aaKnown RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 OR52D1Q9H346 318 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 PIGUQ9H490 435 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 ANKRD19PQ9H560 264 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 SIAEQ9HAT2 523 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 TMEM165Q9HC07 324 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 LYRM4Q9HD34 91 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 MEPEQ9NQ76 525 aaPredicted RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 KLHL28Q9NXS3 571 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 MAT2BQ9NZL9 334 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 CALML5Q9NZT1 146 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 MALT1Q9UDY8 824 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 PAIP2BQ9ULR5 123 aaKnown RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 CDH10Q9Y6N8 788 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 MPDZO75970 2070 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 EXPH5Q8NEV8 1989 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF469Q96JG9 3925 aaPredicted RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 NSD1Q96L73 2696 aaPredicted RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 CDHR4A6H8M9 788 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 CD8B2A6NJW9 211 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 DUXAA6NLW8 204 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 A8MV72 311 aaPredicted RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 BHLHE40O14503 412 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 IGHA1P01876 353 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 NGFRP08138 427 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 CSF3P09919 207 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 CD8BP10966 210 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 NT5EP21589 574 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 GABRA5P31644 462 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 OPRM1P35372 400 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 MAP3K8P41279 467 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 GPR50Q13585 617 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 P2RY14Q15391 338 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 OR1Q1Q15612 314 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF362Q5T0B9 420 aaPredicted RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 PRSS57Q6UWY2 283 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 TMEM91Q6ZNR0 172 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 AKAP14Q86UN6 197 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 KLBQ86Z14 1044 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 OR51G2Q8NGK0 314 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 OR13C2Q8NGS9 318 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 OSTF1Q92882 214 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 ANKRD9Q96BM1 317 aaPredicted RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 NTNG2Q96CW9 530 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 KCTD7Q96MP8 289 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 PRDM14Q9GZV8 571 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 MMP28Q9H239 520 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 PROK2Q9HC23 129 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 PHF11Q9UIL8 331 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 DTX4Q9Y2E6 619 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 FN1P02751 2386 aaKnown RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 HEATR5AQ86XA9 2040 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 TRAV27A0A087WT01 109 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 A0A0B4J293 547 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 MBD3L4A6NDZ8 208 aaPredicted RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 MBD3L3A6NE82 208 aaPredicted RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 MBD3L5A6NJ08 208 aaPredicted RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 E9PI62 339 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 H7C1Q1 480 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 SMPD2O60906 423 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 CBX7O95931 251 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 IGKV1D-16P01601 117 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 ATP1B1P05026 303 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 NID1P14543 1247 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 APEX1P27695 318 aaKnown RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 HTR1FP30939 366 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 IFNGR2P38484 337 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 SLC9A3P48764 834 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 FAM27D1Q5T7N8 215 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 FAM131AQ6UXB0 335 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 GLCCI1Q86VQ1 547 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF619Q8N2I2 560 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 RFLNBQ8N5W9 214 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 CLDN22Q8N7P3 220 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 OR2T33Q8NG76 320 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 MBD3L2Q8NHZ7 208 aaPredicted RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 CNOT9Q92600 299 aaKnown RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 UFD1Q92890 307 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 PTP4A1Q93096 173 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 HOXD1Q9GZZ0 328 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 CALHM2Q9HA72 323 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 FLRT3Q9NZU0 649 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 COMMD3Q9UBI1 195 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 EXOGQ9Y2C4 368 aaKnown RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 EXOSC1Q9Y3B2 195 aaKnown RBP7.36□□□□□ -1.23
NEDD8-207ENST00000533242 DNHD1Q96M86 4753 aa7.36□□□□□ -1.23
NEDD8-207ENST00000533242 TRAPPC13A5PLN9 417 aa7.35□□□□□ -1.23
NEDD8-207ENST00000533242 C12orf71A8MTZ7 269 aa7.35□□□□□ -1.23
NEDD8-207ENST00000533242 GABRPO00591 440 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms