RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.87□□□□□ -1.31
CD44-232ENST00000531118 GPR45Q9Y5Y3 372 aa6.87□□□□□ -1.31
CD44-232ENST00000531118 DUXAA6NLW8 204 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CEACAM18A8MTB9 384 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 A8MVM7 634 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 DHHO43323 396 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 FZD7O75084 574 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 NPIPB7O75200 414 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 IGHV3-13P01766 116 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 IGHV4-59P01825 116 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 SERPINA5P05154 406 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 GUSBP08236 651 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 SBK2P0C263 348 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 UROSP10746 265 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 UQCRBP14927 111 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 DRD4P21917 467 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 FUT4P22083 530 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CXCR1P25024 350 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 GTF2E2P29084 291 aaKnown RBP6.86□□□□□ -1.31
CD44-232ENST00000531118 RPL3P39023 403 aaKnown RBP6.86□□□□□ -1.31
CD44-232ENST00000531118 MMP15P51511 669 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 PLTPP55058 493 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 BTG1P62324 171 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 HPCAP84074 193 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 BST1Q10588 318 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CAMK2DQ13557 499 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 HERPUD1Q15011 391 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 ZMYND11Q15326 602 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 SPRNQ5BIV9 151 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 TMEM255AQ5JRV8 349 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CARD17Q5XLA6 110 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CLEC6AQ6EIG7 209 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 DHRS7BQ6IAN0 325 aaPredicted RBP6.86□□□□□ -1.31
CD44-232ENST00000531118 ZDHHC24Q6UX98 284 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 FRMD7Q6ZUT3 714 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CREG2Q8IUH2 290 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 DDIASQ8IXT1 998 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 C20orf196Q8IYI0 205 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CLEC4FQ8N1N0 589 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CCNYL1Q8N7R7 359 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 ZSCAN4Q8NAM6 433 aaPredicted RBP6.86□□□□□ -1.31
CD44-232ENST00000531118 SLC30A7Q8NEW0 376 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 IPCEF1Q8WWN9 437 aaPredicted RBP6.86□□□□□ -1.31
CD44-232ENST00000531118 C11orf40Q8WZ69 217 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 HRASLS5Q96KN8 279 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 DCLRE1CQ96SD1 692 aaKnown RBP6.86□□□□□ -1.31
CD44-232ENST00000531118 FOXB1Q99853 325 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 PTDSS2Q9BVG9 487 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 SSBP3Q9BWW4 388 aaPredicted RBP6.86□□□□□ -1.31
CD44-232ENST00000531118 EGLN1Q9GZT9 426 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 FN3KRPQ9HA64 309 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CDH20Q9HBT6 801 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 TCF7L2Q9NQB0 619 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 TMEM216Q9P0N5 145 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 POFUT2Q9Y2G5 429 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 TMED5Q9Y3A6 229 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 U3KQE9 123 aa6.86□□□□□ -1.31
CD44-232ENST00000531118 CFAP73A6NFT4 308 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 H3BQF6 201 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 SLC28A1O00337 649 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 TNFRSF13BO14836 293 aaPredicted RBP6.85□□□□□ -1.31
CD44-232ENST00000531118 LSM1O15116 133 aaKnown RBP6.85□□□□□ -1.31
CD44-232ENST00000531118 CFLARO15519 480 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 RAD51CO43502 376 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 XPNPEP2O43895 674 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 MFN2O95140 757 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 AHSA1O95433 338 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 PPP1R3DO95685 299 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 SNAP29O95721 258 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 CD55P08174 381 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 ADH4P08319 380 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 TFPTP0C1Z6 253 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 PATE4P0C8F1 98 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 OR12D1P0DN82 309 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 THRBP10828 461 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 CCL2P13500 99 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 PHBP35232 272 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 SERPINB9P50453 376 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 HBA1P69905 142 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 C1DQ13901 141 aaKnown RBP6.85□□□□□ -1.31
CD44-232ENST00000531118 MOGQ16653 247 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 LSM12Q3MHD2 195 aaKnown RBP6.85□□□□□ -1.31
CD44-232ENST00000531118 GALNTL6Q49A17 601 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 RFTN2Q52LD8 501 aaPredicted RBP6.85□□□□□ -1.31
CD44-232ENST00000531118 ATAD3BQ5T9A4 648 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 FOXB2Q5VYV0 432 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 ZNF774Q6NX45 483 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 TNFAIP8L2Q6P589 184 aaPredicted RBP6.85□□□□□ -1.31
CD44-232ENST00000531118 Q6ZTK2 550 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 FGFBP3Q8TAT2 258 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 TBC1D15Q8TC07 691 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 MIPOL1Q8TD10 442 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 ROPN1LQ96C74 230 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 ZG16BQ96DA0 208 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 THOC1Q96FV9 657 aaKnown RBP6.85□□□□□ -1.31
CD44-232ENST00000531118 OXGR1Q96P68 337 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 MECRQ9BV79 373 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 ULBP2Q9BZM5 246 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 BCL2L14Q9BZR8 327 aa6.85□□□□□ -1.31
CD44-232ENST00000531118 B3GAT2Q9NPZ5 323 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms