RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 MARVELD2Q8N4S9 558 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 SLC5A8Q8N695 610 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 GATSQ8NAP1 163 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 NFAM1Q8NET5 270 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 SLC24A4Q8NFF2 622 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 OR10G2Q8NGC3 310 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 OR13C2Q8NGS9 318 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 PHF10Q8WUB8 498 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 CT55Q8WUE5 264 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 RASSF5Q8WWW0 418 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 CNOT9Q92600 299 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 DAZLQ92904 295 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 FKBP10Q96AY3 582 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 R3HDM4Q96D70 268 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 BOD1Q96IK1 185 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 PRRC1Q96M27 445 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 ZNF347Q96SE7 839 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 SECISBP2Q96T21 854 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 MCHR1Q99705 422 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 RBM4BQ9BQ04 359 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 WDR77Q9BQA1 342 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 FNDC11Q9BVV2 318 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 ELOVL1Q9BW60 279 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 RBM4Q9BWF3 364 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 FAM192AQ9GZU8 254 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 SLC5A7Q9GZV3 580 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 WWTR1Q9GZV5 400 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 TOR3AQ9H497 397 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 Q9H521 79 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 TRIM45Q9H8W5 580 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 NMNAT1Q9HAN9 279 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 Q9N2J8 555 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 TREM1Q9NP99 234 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 MAN2C1Q9NTJ4 1040 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 USE1Q9NZ43 259 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 MRPL15Q9P015 296 aaKnown RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 FOXJ2Q9P0K8 574 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 COPS7AQ9UBW8 275 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 ZNF223Q9UK11 482 aaPredicted RBP3.77□□□□□ -1.81
CD44-226ENST00000527889 GAB2Q9UQC2 676 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 IFT52Q9Y366 437 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 ORC6Q9Y5N6 252 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 PLCE1Q9P212 2302 aa3.77□□□□□ -1.81
CD44-226ENST00000527889 CADP27708 2225 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 A0A1B0GWJ7 208 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 SH3PXD2BA1X283 911 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 FRG2CA6NGY1 282 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 AHRRA9YTQ3 701 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 NPIPB9F8W1W9 429 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 TMX2-CTNND1H3BSU7 103 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 M0R129 80 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 WWP2O00308 870 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 FAAHO00519 579 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 BCKDKO14874 412 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 OR10H3O60404 316 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 DPM1O60762 260 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ZNF354AO60765 605 aaPredicted RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 ICOSLGO75144 302 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 CLN5O75503 358 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 AKR7A3O95154 331 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 OR2C1O95371 312 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 OXSR1O95747 527 aaPredicted RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 THY1P04216 161 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 LYNP07948 512 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 IGFBP1P08833 259 aaPredicted RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 ITGAMP11215 1152 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 CDH2P19022 906 aaPredicted RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 CBLP22681 906 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 MYF6P23409 242 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 HTR2AP28223 471 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 IL12BP29460 328 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 OTX2P32243 289 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 RYKP34925 604 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 TAGLN2P37802 199 aaKnown RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 LIPAP38571 399 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 FOLR3P41439 243 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 MTNR1AP48039 350 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 CLK3P49761 638 aaKnown RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 CCR4P51679 360 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 GPR143P51810 404 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ARHGDIAP52565 204 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 HMGA2P52926 109 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 EFNB1P98172 346 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 MYBPC1Q00872 1141 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 PLCXD2Q0VAA5 305 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 DYNC1I2Q13409 638 aaKnown RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 ILKQ13418 452 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 FGFBP1Q14512 234 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 OR1Q1Q15612 314 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 CD226Q15762 336 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ZNF141Q15928 474 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 DECR1Q16698 335 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 MICAQ29983 383 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 SLC36A3Q495N2 470 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 COLEC12Q5KU26 742 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 DCST1Q5T197 706 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 PRAMEF20Q5VT98 475 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 ZNF770Q6IQ21 691 aaPredicted RBP3.76□□□□□ -1.81
CD44-226ENST00000527889 PODNL1Q6PEZ8 512 aa3.76□□□□□ -1.81
CD44-226ENST00000527889 TMEM205Q6UW68 189 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms