RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 FCAMRQ8WWV6 532 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 THAP4Q8WY91 577 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 HIST1H2BHQ93079 126 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 ISOC2Q96AB3 205 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 MRGPRX3Q96LB0 322 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 ZNF582Q96NG8 517 aaPredicted RBP5.31□□□□□ -1.56
CD44-225ENST00000527326 ALKBH3Q96Q83 286 aaPredicted RBP5.31□□□□□ -1.56
CD44-225ENST00000527326 DIRC2Q96SL1 478 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 STACQ99469 402 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 PHB2Q99623 299 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 HIST1H2BNQ99877 126 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 HIST1H2BMQ99879 126 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 HIST1H2BLQ99880 126 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 MICU1Q9BPX6 476 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 VPS25Q9BRG1 176 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 WDR13Q9H1Z4 485 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 MFSD1Q9H3U5 465 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 LRTM1Q9HBL6 345 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 PARP11Q9NR21 331 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 TAS2R8Q9NYW2 309 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 NUDT4Q9NZJ9 180 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 H2AFY2Q9P0M6 372 aaPredicted RBP5.31□□□□□ -1.56
CD44-225ENST00000527326 GSKIPQ9P0R6 139 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 DKKL1Q9UK85 242 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 NME7Q9Y5B8 376 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 MMP24Q9Y5R2 645 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 U3KQE9 123 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 SIP14410 1827 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 NUP98P52948 1817 aa5.31□□□□□ -1.56
CD44-225ENST00000527326 TMEM265A0A087WTH1 108 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 A0A087WWC5 75 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 A0A0G2JK05 382 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 A0A1B0GTI1 187 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 A0A1B0GTL3 188 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 SERTM2A0A1B0GWG4 89 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 OR5H14A6NHG9 310 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 HEPACAM2A8MVW5 462 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 MAGEB17A8MXT2 336 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 PPP5D1E7EU14 171 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 ACOT7O00154 380 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 FAAHO00519 579 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 BHLHE40O14503 412 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 OR2J2O76002 312 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 ZNF432O94892 652 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 IL18BPO95998 194 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 CYB5R3P00387 301 aaPredicted RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 CST3P01034 146 aaPredicted RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 MT-ND5P03915 603 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 RPN2P04844 631 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 ERCC1P07992 297 aaPredicted RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 MELTFP08582 738 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 FCGR3AP08637 254 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 NBEAP1P0C6P0 100 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 FAM157CP0CG43 387 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 STAG3L3P0CL85 134 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 LIMS3P0CW19 117 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 LIMS4P0CW20 117 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 TDGF1P13385 188 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 IRF2P14316 349 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 CCKARP32238 428 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 BRS3P32247 399 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 XCR1P46094 333 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 CAPZBP47756 277 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 SLC6A9P48067 706 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 CDC34P49427 236 aaPredicted RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 AFF3P51826 1226 aaKnown RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 PTTG1IPP53801 180 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 PRRX1P54821 245 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 GAS1P54826 345 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 SLC37A1P57057 533 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 RGS8P57771 180 aaPredicted RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 SMIM11AP58511 58 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 TAS2R38P59533 333 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 RPS14P62263 151 aaKnown RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 HSF1Q00613 529 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 MC1RQ01726 317 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 SPOCK1Q08629 439 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 MRPL49Q13405 166 aaKnown RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 OR5I1Q13606 314 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 PCBP2Q15366 365 aaKnown RBP eCLIP5.3□□□□□ -1.56
CD44-225ENST00000527326 SHHQ15465 462 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 RAB11BQ15907 218 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 SYPL1Q16563 259 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 RNF151Q2KHN1 245 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 SYT14P1Q58G82 188 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 C10orf120Q5SQS8 335 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 UBXN11Q5T124 520 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 DCAF12L2Q5VW00 463 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 OR2T2Q6IF00 324 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 ZNF770Q6IQ21 691 aaPredicted RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 SMARCD3Q6STE5 483 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 BTNL8Q6UX41 500 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 BHLHA15Q7RTS1 189 aaPredicted RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 NUFIP2Q7Z417 695 aaKnown RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 GRINAQ7Z429 371 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 TSEN54Q7Z6J9 526 aaKnown RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 CTU1Q7Z7A3 348 aaKnown RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 TMPRSS11BQ86T26 416 aa5.3□□□□□ -1.56
CD44-225ENST00000527326 LRRC56Q8IYG6 542 aaPredicted RBP5.3□□□□□ -1.56
CD44-225ENST00000527326 GABRG1Q8N1C3 465 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms