RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	OAZ3	Q9UMX2	235 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	IER3IP1	Q9Y5U9	82 aa		18.24	■□□□□ 0.51
CD44-222	ENST00000526025	HECTD1	Q9ULT8	2610 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	TEX13C	A0A0J9YWL9	993 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	CIB4	A0PJX0	185 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	SH3D21	A4FU49	640 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	OR5H1	A6NKK0	313 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	PPP1R3D	O95685	299 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	DAP	P51397	102 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	FOXG1	P55316	489 aa	Predicted RBP	18.23	■□□□□ 0.51
CD44-222	ENST00000526025	CEACAM16	Q2WEN9	425 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	MEST	Q5EB52	335 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	KDM4D	Q6B0I6	523 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	ANKRD16	Q6P6B7	361 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	LNX2	Q8N448	690 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	OR2T33	Q8NG76	320 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	OR8D4	Q8NGM9	314 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	OR1K1	Q8NGR3	316 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	TEX47	Q8TBZ9	253 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	MCHR2	Q969V1	340 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	ERMAP	Q96PL5	475 aa	Predicted RBP	18.23	■□□□□ 0.51
CD44-222	ENST00000526025	RBP7	Q96R05	134 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	OBP2B	Q9NPH6	170 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	PAPOLB	Q9NRJ5	636 aa	Known RBP	18.23	■□□□□ 0.51
CD44-222	ENST00000526025	TBC1D23	Q9NUY8	699 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	IL20RA	Q9UHF4	553 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	ENOPH1	Q9UHY7	261 aa		18.23	■□□□□ 0.51
CD44-222	ENST00000526025	PRSS37	A4D1T9	235 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	MGRN1	O60291	552 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	RAD51D	O75771	328 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	QDPR	P09417	244 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	EPX	P11678	715 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	SLC36A3	Q495N2	470 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	CCDC36	Q8IYA8	594 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	WFIKKN1	Q96NZ8	548 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	RBM4B	Q9BQ04	359 aa	Known RBP	18.22	■□□□□ 0.51
CD44-222	ENST00000526025	MED18	Q9BUE0	208 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	RBM4	Q9BWF3	364 aa	Known RBP	18.22	■□□□□ 0.51
CD44-222	ENST00000526025	TSSK6	Q9BXA6	273 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	ZNF226	Q9NYT6	803 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	VSX1	Q9NZR4	365 aa	Predicted RBP	18.22	■□□□□ 0.51
CD44-222	ENST00000526025	PRR14L	Q5THK1	2151 aa		18.22	■□□□□ 0.51
CD44-222	ENST00000526025	SLC22A23	A1A5C7	686 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	ARHGEF9	O43307	516 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	DHH	O43323	396 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	SOX14	O95416	240 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	ESRRG	P62508	458 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	PPP2R2B	Q00005	443 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	CD47	Q08722	323 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	DAZAP2	Q15038	168 aa	Predicted RBP	18.21	■□□□□ 0.51
CD44-222	ENST00000526025	SYT14	Q8NB59	555 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	ICA1L	Q8NDH6	482 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	BCL2L2	Q92843	193 aa	Predicted RBP	18.21	■□□□□ 0.51
CD44-222	ENST00000526025	RASD2	Q96D21	266 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	ZNF837	Q96EG3	531 aa	Predicted RBP	18.21	■□□□□ 0.51
CD44-222	ENST00000526025	MOV10	Q9HCE1	1003 aa	Known RBP	18.21	■□□□□ 0.51
CD44-222	ENST00000526025	SLC17A5	Q9NRA2	495 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	KRT84	Q9NSB2	600 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	CRIM1	Q9NZV1	1036 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	AMDHD2	Q9Y303	409 aa		18.21	■□□□□ 0.51
CD44-222	ENST00000526025	ARPC4-TTLL3	A0A0A6YYG9	625 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	SAC3D1	A6NKF1	404 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025		H3BN98	237 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	SOCS2	O14508	198 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	NOS3	P29474	1203 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	HOXC12	P31275	282 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	ZNF84	P51523	738 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	ARF1	P84077	181 aa	Known RBP	18.2	■□□□□ 0.5
CD44-222	ENST00000526025	TSC22D1	Q15714	1073 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	CLEC12A	Q5QGZ9	265 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	SLC27A4	Q6P1M0	643 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	SLC25A47	Q6Q0C1	308 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	LINC01560	Q8TB33	94 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	MUCL1	Q96DR8	90 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	FOXB1	Q99853	325 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	NELFA	Q9H3P2	528 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	USE1	Q9NZ43	259 aa		18.2	■□□□□ 0.5
CD44-222	ENST00000526025	THBD	P07204	575 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	IGFBP1	P08833	259 aa	Predicted RBP	18.19	■□□□□ 0.5
CD44-222	ENST00000526025	HIST1H1C	P16403	213 aa	Known RBP	18.19	■□□□□ 0.5
CD44-222	ENST00000526025	CRYGS	P22914	178 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	GRK5	P34947	590 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	ELF3	P78545	371 aa	Predicted RBP	18.19	■□□□□ 0.5
CD44-222	ENST00000526025	TAB1	Q15750	504 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	PGGHG	Q32M88	737 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	TBRG1	Q3YBR2	411 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	C9orf135	Q5VTT2	229 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	PTCHD4	Q6ZW05	846 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	JAZF1	Q86VZ6	243 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	OR4Q3	Q8NH05	313 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	C9orf16	Q9BUW7	83 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	SLC25A19	Q9HC21	320 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	TMEM38B	Q9NVV0	291 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	TMEFF2	Q9UIK5	374 aa	Predicted RBP	18.19	■□□□□ 0.5
CD44-222	ENST00000526025	KLHL21	Q9UJP4	597 aa		18.19	■□□□□ 0.5
CD44-222	ENST00000526025	ASH1L	Q9NR48	2969 aa	Known RBP	18.19	■□□□□ 0.5
CD44-222	ENST00000526025	IGFBP5	P24593	272 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	CDKN2A	P42771	156 aa	Known RBP	18.18	■□□□□ 0.5
CD44-222	ENST00000526025	GIPR	P48546	466 aa		18.18	■□□□□ 0.5
CD44-222	ENST00000526025	MRPS34	P82930	218 aa	Known RBP	18.18	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms