RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 RNF215Q9Y6U7 377 aa14.98□□□□□ -0.01
CCDC88B-210ENST00000494566 TRAV8-7A0A075B6U6 113 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 FREM3P0C091 2139 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 ZNF35P13682 527 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 P2RX1P51575 399 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 NR0B1P51843 470 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 RPS4XP62701 263 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 ACTA2P62736 377 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 ACTG2P63267 376 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 LGALS3BPQ08380 585 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 PCGF3Q3KNV8 242 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 DCAF12L2Q5VW00 463 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 WBP2NLQ6ICG8 309 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 POMGNT2Q8NAT1 580 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 THEM6Q8WUY1 208 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 TAAR8Q969N4 342 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 ADAD1Q96M93 576 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 TCF7L1Q9HCS4 588 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 MMP25Q9NPA2 562 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 PRODH2Q9UF12 536 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 MOKQ9UQ07 419 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 TLCD2A6NGC4 264 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 SHOXO15266 292 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 ZNF264O43296 627 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 KCNAB3O43448 404 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 PPM1BO75688 479 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 ADRA2CP18825 462 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 PSMD4P55036 377 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 RPL18Q07020 188 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 UBE2NLQ5JXB2 153 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 FNDC7Q5VTL7 733 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 IDO2Q6ZQW0 420 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 TMED4Q7Z7H5 227 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 SLC25A36Q96CQ1 311 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 TRAF4Q9BUZ4 470 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 NUDT9Q9BW91 350 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 GSX2Q9BZM3 304 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 C12orf4Q9NQ89 552 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 KIF26BQ2KJY2 2108 aa14.97□□□□□ -0.01
CCDC88B-210ENST00000494566 IGHV3-20A0A0C4DH32 117 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 GOSR2O14653 212 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 IGF2P01344 180 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 IFI6P09912 130 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 CD27P26842 260 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 CFHR1Q03591 330 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 ZNF117Q03924 483 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 GGTLC2Q14390 218 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 TRAM1Q15629 374 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 C3P1Q6ZMU1 363 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 HAVCR2Q8TDQ0 301 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 NMNAT2Q9BZQ4 307 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 WDR76Q9H967 626 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 FBXL2Q9UKC9 423 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 NPFFR2Q9Y5X5 522 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 CBFBQ13951 182 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 MFSD13AQ14CX5 517 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 RPL22L1Q6P5R6 122 aaKnown RBP14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 CFAP77Q6ZQR2 320 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 FAM122BQ7Z309 247 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 FGD2Q7Z6J4 655 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 BPHLQ86WA6 291 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 CMIPQ8IY22 773 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 OR51D1Q8NGF3 324 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 OR6N2Q8NGY6 317 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 OR1L3Q8NH93 324 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 NKD1Q969G9 470 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 RNF166Q96A37 237 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 ZNF285Q96NJ3 590 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 RXFP3Q9NSD7 469 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 SDHAF2Q9NX18 166 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 KLHL9Q9P2J3 617 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 V9GY05 133 aa14.96□□□□□ -0.01
CCDC88B-210ENST00000494566 C2orf72A6NCS6 295 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF879B4DU55 563 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 GLCEO94923 617 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 HLA-DQA2P01906 255 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 LPLP06858 475 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 VSIG10L2P0DP72 767 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 FOLR1P15328 257 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 PTH2RP49190 550 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 ARL4DP49703 201 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 MESTQ5EB52 335 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 LIPNQ5VXI9 398 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 SLC22A10Q63ZE4 541 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 C17orf107Q6ZR85 190 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 DPY19L4Q7Z388 723 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 SLITRK4Q8IW52 837 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 SYS1Q8N2H4 156 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 TSPAN32Q96QS1 320 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 SYT4Q9H2B2 425 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 PIPOXQ9P0Z9 390 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 ABRACLQ9P1F3 81 aa14.96□□□□□ -0.02
CCDC88B-210ENST00000494566 METTL12A8MUP2 240 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 CD53P19397 219 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 PRPS1P60891 318 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 NSDHLQ15738 373 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 LANCL3Q6ZV70 420 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 FAM219AQ8IW50 185 aa14.95□□□□□ -0.02
CCDC88B-210ENST00000494566 OR6V1Q8N148 313 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms