RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 LHFPL5Q8TAF8 219 aa14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 BAHD1Q8TBE0 780 aaPredicted RBP14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 PGAM5Q96HS1 289 aa14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 INTS14Q96SY0 518 aa14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 TEAD3Q99594 435 aa14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 NXF2Q9GZY0 626 aaKnown RBP14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 DLL4Q9NR61 685 aa14.96□□□□□ -0.02
CCDC88B-209ENST00000494080 C2CD4DB7Z1M9 353 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 HCRTR1O43613 425 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 DPM1O60762 260 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 PRAMEF4O60810 478 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 SCRG1O75711 98 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 SBK2P0C263 348 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 CD1CP29017 333 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 UBE2IP63279 158 aaKnown RBP14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 BTG2P78543 158 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 PRAMEF9Q5VWM5 478 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 C12orf73Q69YU5 71 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 ACBD4Q8NC06 268 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 NANPQ8TBE9 248 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 PHF7Q9BWX1 381 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 PLA2G12AQ9BZM1 189 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 DUSP22Q9NRW4 184 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF701Q9NV72 531 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 TMEM72A0PK05 275 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 TUBAL3A6NHL2 446 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 STMND1H3BQB6 276 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 YY2O15391 372 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 SRMP19623 302 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 TMEM200AQ86VY9 491 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC35F3Q8IY50 421 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 OR10Z1Q8NGY1 313 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 DDIT4LQ96D03 193 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 PBDC1Q9BVG4 233 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 LYRM4Q9HD34 91 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 B3GAT2Q9NPZ5 323 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 EP400Q96L91 3159 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 SCN4AP35499 1836 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 IGHV3-20A0A0C4DH32 117 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 MED6O75586 246 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 IGHA2P01877 340 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 P04436 131 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 GABRG2P18507 467 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 GLO1Q04760 184 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 GPR139Q6DWJ6 353 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 STEAP1BQ6NZ63 245 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF793Q6ZN11 406 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 UEVLDQ8IX04 471 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 TMEM106AQ96A25 262 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 NUDT22Q9BRQ3 303 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 RBM24Q9BX46 236 aaKnown RBP14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 RPS10-NUDT3A0A1W2PQS6 291 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 OR2T7P0C7T2 308 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 RPS10P46783 165 aaKnown RBP14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 PDSS1Q5T2R2 415 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 OR7E24Q6IFN5 339 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 OR2T27Q8NH04 317 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 OR6C1Q96RD1 312 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 ELF4Q99607 663 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 SMIM3Q9BZL3 60 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 KCNE3Q9Y6H6 103 aa14.95□□□□□ -0.02
CCDC88B-209ENST00000494080 C2orf72A6NCS6 295 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 KDM4EB2RXH2 506 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 CCSO14618 274 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 GALR3O60755 368 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 KNG1P01042 644 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 LIMS3P0CW19 117 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 LIMS4P0CW20 117 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 MAKP20794 623 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC6A1P30531 599 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 EEF1A2Q05639 463 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF674Q2M3X9 581 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 SLC35D2Q76EJ3 337 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 CMTM4Q8IZR5 234 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF511Q8NB15 262 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 OR51D1Q8NGF3 324 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 C3orf49Q96BT1 292 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 PRRT1Q99946 306 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 SULT4A1Q9BR01 284 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 ZMAT3Q9HA38 289 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 KLK11Q9UBX7 282 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF629Q9UEG4 869 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 MEIKINA0A087WXM9 373 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 A0A0A6YYH2 397 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 LINC00862A6NCI5 91 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 A6NJ64 397 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 M0QYG6 137 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 TO15178 435 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 SHOXO15266 292 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 WISP3O95389 354 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 OR8U9P0C7N5 309 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 POU3F1Q03052 451 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 CCINQ13939 588 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 MFSD13AQ14CX5 517 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 DUSP23Q9BVJ7 150 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 MS4A7Q9GZW8 240 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 UBE2ZQ9H832 354 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 RBBP6Q7Z6E9 1792 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 H7C417 338 aa14.94□□□□□ -0.02
CCDC88B-209ENST00000494080 ZNF84P51523 738 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms