RNA–Protein interactions for RNA: ENST00000490942.1

TRA2A-208, Transcript of transformer 2 alpha homolog, human

TSL 1 (best)

Gene TRA2A, Length 862 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRA2A-208	ENST00000490942	MCHR2	Q969V1	340 aa		13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942		Q96M85	177 aa		13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942	RBM4B	Q9BQ04	359 aa	Known RBP	13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942	RBM4	Q9BWF3	364 aa	Known RBP	13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942	SEMA6A	Q9H2E6	1030 aa		13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942	EGLN3	Q9H6Z9	239 aa		13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942	TBC1D23	Q9NUY8	699 aa		13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942	ZNF226	Q9NYT6	803 aa		13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942	VSX1	Q9NZR4	365 aa	Predicted RBP	13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942	IER3IP1	Q9Y5U9	82 aa		13.92	□□□□□ -0.18
TRA2A-208	ENST00000490942	CIB4	A0PJX0	185 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	PRSS37	A4D1T9	235 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	DHH	O43323	396 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	LYZL6	O75951	148 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	PPP1R3D	O95685	299 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	EPX	P11678	715 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	COX6B1	P14854	86 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	NOS3	P29474	1203 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	DAP	P51397	102 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	RUNX1T1	Q06455	604 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	DAZAP2	Q15038	168 aa	Predicted RBP	13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	CEACAM16	Q2WEN9	425 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	SLC36A3	Q495N2	470 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	MEST	Q5EB52	335 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	PHYHD1	Q5SRE7	291 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	CARD17	Q5XLA6	110 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	SLC27A4	Q6P1M0	643 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	LINGO2	Q7L985	606 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	DPPA2	Q7Z7J5	298 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	WDFY1	Q8IWB7	410 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	OR1K1	Q8NGR3	316 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	S100PBP	Q96BU1	408 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	ERMAP	Q96PL5	475 aa	Predicted RBP	13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	C9orf16	Q9BUW7	83 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	TSSK6	Q9BXA6	273 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	TEX12	Q9BXU0	123 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	PLA2G12A	Q9BZM1	189 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	C8orf4	Q9NR00	106 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	USE1	Q9NZ43	259 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	AMDHD2	Q9Y303	409 aa		13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	MAGED1	Q9Y5V3	778 aa	Predicted RBP	13.91	□□□□□ -0.18
TRA2A-208	ENST00000490942	ARPC4-TTLL3	A0A0A6YYG9	625 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	TEX13C	A0A0J9YWL9	993 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	SLC22A23	A1A5C7	686 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	SH3D21	A4FU49	640 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	ANKRD65	E5RJM6	399 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942		H3BN98	237 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	ARHGEF9	O43307	516 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	QDPR	P09417	244 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	HOXC12	P31275	282 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	ZNF84	P51523	738 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	LGALS3BP	Q08380	585 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	SLC25A47	Q6Q0C1	308 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	FAM169B	Q8N8A8	192 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	ICA1L	Q8NDH6	482 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	OR8D4	Q8NGM9	314 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	BCL2L2	Q92843	193 aa	Predicted RBP	13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	FOXB1	Q99853	325 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	MED18	Q9BUE0	208 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	DCLRE1B	Q9H816	532 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	SLC25A19	Q9HC21	320 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	NGB	Q9NPG2	151 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	KRT84	Q9NSB2	600 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	IL20RA	Q9UHF4	553 aa		13.9	□□□□□ -0.18
TRA2A-208	ENST00000490942	COL12A1	Q99715	3063 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	BAHCC1	Q9P281	2608 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	RRP9	O43818	475 aa	Known RBP	13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	RAD51D	O75771	328 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	SOX14	O95416	240 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	IFNG	P01579	166 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	HMGN1	P05114	100 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	NPR2	P20594	1047 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	CRABP1	P29762	137 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	GRK5	P34947	590 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	GIPR	P48546	466 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	FOXG1	P55316	489 aa	Predicted RBP	13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	ELF3	P78545	371 aa	Predicted RBP	13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	MRPS34	P82930	218 aa	Known RBP	13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	ARF1	P84077	181 aa	Known RBP	13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	CD47	Q08722	323 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	TBRG1	Q3YBR2	411 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	CLEC12A	Q5QGZ9	265 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	DNM1P34	Q6PK57	102 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	FOXL2NB	Q6ZUU3	175 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	JAZF1	Q86VZ6	243 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	SYT14	Q8NB59	555 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	MUCL1	Q96DR8	90 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	C14orf79	Q96F83	325 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	WFIKKN1	Q96NZ8	548 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	WAC	Q9BTA9	647 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	SLC17A5	Q9NRA2	495 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	TMEM38B	Q9NVV0	291 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	CRIM1	Q9NZV1	1036 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	KLHL21	Q9UJP4	597 aa		13.89	□□□□□ -0.19
TRA2A-208	ENST00000490942	SAC3D1	A6NKF1	404 aa		13.88	□□□□□ -0.19
TRA2A-208	ENST00000490942	SOCS2	O14508	198 aa		13.88	□□□□□ -0.19
TRA2A-208	ENST00000490942	CASK	O14936	926 aa		13.88	□□□□□ -0.19
TRA2A-208	ENST00000490942	FARS2	O95363	451 aa	Known RBP	13.88	□□□□□ -0.19
TRA2A-208	ENST00000490942	WNT11	O96014	354 aa		13.88	□□□□□ -0.19
TRA2A-208	ENST00000490942	REN	P00797	406 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms