RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 NCCRP1Q6ZVX7 275 aaPredicted RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 NEGR1Q7Z3B1 354 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 PUSL1Q8N0Z8 303 aaKnown RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 FAM86B1Q8N7N1 296 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 SDR9C7Q8NEX9 313 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 OR1L6Q8NGR2 347 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 SDR42E1Q8WUS8 393 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 GEMIN6Q8WXD5 167 aaKnown RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 SGK3Q96BR1 496 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 TRIM44Q96DX7 344 aaPredicted RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 SLC41A3Q96GZ6 507 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 C12orf42Q96LP6 360 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 TCEANC2Q96MN5 208 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 OR8B4Q96RC9 309 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 CNN2Q99439 309 aaKnown RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 SORT1Q99523 831 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 RARRES2Q99969 163 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 TMEM59Q9BXS4 323 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 ANKRD19PQ9H560 264 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 AZI2Q9H6S1 392 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 RANBP3Q9H6Z4 567 aaPredicted RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 NMRAL1Q9HBL8 299 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 TM9SF3Q9HD45 589 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 SLC40A1Q9NP59 571 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 SIRT7Q9NRC8 400 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 CTPS2Q9NRF8 586 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 CTNNA3Q9UI47 895 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 PACSIN2Q9UNF0 486 aaPredicted RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 DDX49Q9Y6V7 483 aaKnown RBP1.22□□□□□ -2.21
SMC4-220ENST00000488017 PLA2R1Q13018 1463 aa1.22□□□□□ -2.21
SMC4-220ENST00000488017 NID2Q14112 1375 aa1.21□□□□□ -2.21
SMC4-220ENST00000488017 MN1Q10571 1320 aaPredicted RBP1.21□□□□□ -2.22
SMC4-220ENST00000488017 UNC13AQ9UPW8 1703 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 BTBD17A6NE02 478 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ZNF726A6NNF4 738 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 CCL21O00585 134 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 XKRYO14609 159 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 MGRN1O60291 552 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 UPK3AO75631 287 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 SURF6O75683 361 aaKnown RBP1.21□□□□□ -2.22
SMC4-220ENST00000488017 TSPAN12O95859 305 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 BGLAPP02818 100 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 PRPS2P11908 318 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ATP1B2P14415 290 aaPredicted RBP1.21□□□□□ -2.22
SMC4-220ENST00000488017 ETS2P15036 469 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 RORAP35398 523 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ATP5C1P36542 298 aaKnown RBP1.21□□□□□ -2.22
SMC4-220ENST00000488017 FDFT1P37268 417 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 CDKN1BP46527 198 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 RORCP51449 518 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 SUB1P53999 127 aaKnown RBP eCLIP1.21□□□□□ -2.22
SMC4-220ENST00000488017 ACTR1AP61163 376 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 OGDHQ02218 1023 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 IL24Q13007 206 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 CHIT1Q13231 466 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ZNF77Q15935 545 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 KRTAP6-3Q3LI67 103 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 TTLL9Q3SXZ7 439 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 VAX1Q5SQQ9 334 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 PRR9Q5T870 116 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ZNF880Q6PDB4 577 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 KDM7AQ6ZMT4 941 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 PPP1R42Q7Z4L9 355 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 LHFPL3Q86UP9 236 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 UBALD2Q8IYN6 164 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ZNF679Q8IYX0 411 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ZCCHC7Q8N3Z6 543 aaKnown RBP1.21□□□□□ -2.22
SMC4-220ENST00000488017 ZNF557Q8N988 423 aaPredicted RBP1.21□□□□□ -2.22
SMC4-220ENST00000488017 HSD17B11Q8NBQ5 300 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 OR8J1Q8NGP2 316 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 OR2G2Q8NGZ5 317 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 CD300LFQ8TDQ1 290 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 PLEKHA8Q96JA3 519 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 BMFQ96LC9 184 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 HSFY1Q96LI6 401 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 NPY6RQ99463 290 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 CCT7Q99832 543 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ECSITQ9BQ95 431 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 CHMP4BQ9H444 224 aaKnown RBP1.21□□□□□ -2.22
SMC4-220ENST00000488017 NIPAL2Q9H841 368 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 MRPL47Q9HD33 250 aaKnown RBP1.21□□□□□ -2.22
SMC4-220ENST00000488017 EXD2Q9NVH0 621 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ZNF629Q9UEG4 869 aaPredicted RBP1.21□□□□□ -2.22
SMC4-220ENST00000488017 SLC7A8Q9UHI5 535 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 ZNF639Q9UID6 485 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 GGA2Q9UJY4 613 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 KIAA1257Q9ULG3 409 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 PIGLQ9Y2B2 252 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 GPR179Q6PRD1 2367 aa1.21□□□□□ -2.22
SMC4-220ENST00000488017 GPATCH8Q9UKJ3 1502 aaKnown RBP1.2□□□□□ -2.22
SMC4-220ENST00000488017 DCAF1Q9Y4B6 1507 aa1.2□□□□□ -2.22
SMC4-220ENST00000488017 CDHR2Q9BYE9 1310 aa1.2□□□□□ -2.22
SMC4-220ENST00000488017 A0A1W2PPV9 198 aa1.2□□□□□ -2.22
SMC4-220ENST00000488017 PCP4L1A6NKN8 68 aa1.2□□□□□ -2.22
SMC4-220ENST00000488017 HIDE1A8MVS5 230 aa1.2□□□□□ -2.22
SMC4-220ENST00000488017 H0YHG0 523 aa1.2□□□□□ -2.22
SMC4-220ENST00000488017 GOLGA8SH3BPF8 625 aa1.2□□□□□ -2.22
SMC4-220ENST00000488017 HAS3O00219 553 aa1.2□□□□□ -2.22
SMC4-220ENST00000488017 KMOO15229 486 aa1.2□□□□□ -2.22
SMC4-220ENST00000488017 ERLIN2O94905 339 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms