RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PRKYO43930 277 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 QDPRP09417 244 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 CD8BP10966 210 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 ZNF3P17036 446 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 CHRNB4P30926 498 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 HSPA13P48723 471 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 PCYT1AP49585 367 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 ITGADQ13349 1161 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 KEAP1Q14145 624 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 CRMP1Q14194 572 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 PHYHD1Q5SRE7 291 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 THEM4Q5T1C6 240 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 C6orf52Q5T4I8 152 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 FBXW9Q5XUX1 488 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 LRFN4Q6PJG9 635 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 TCEANCQ8N8B7 351 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 SLC37A3Q8NCC5 494 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 FAM81AQ8TBF8 368 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 FNDC8Q8TC99 324 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 ASB5Q8WWX0 329 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 OTULINQ96BN8 352 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 SNX18Q96RF0 628 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 DDOQ99489 341 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 ULBP2Q9BZM5 246 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 LINC00470Q9BZP3 86 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 SYT4Q9H2B2 425 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 IMPAD1Q9NX62 359 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 VSX1Q9NZR4 365 aaPredicted RBP10.81□□□□□ -0.68
SDC1-206ENST00000482879 FOXD3Q9UJU5 478 aaPredicted RBP10.81□□□□□ -0.68
SDC1-206ENST00000482879 GPR52Q9Y2T5 361 aa10.81□□□□□ -0.68
SDC1-206ENST00000482879 MYO18BQ8IUG5 2567 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 OR6C68A6NDL8 312 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 EEF1E1-BLOC1S5C9J1V9 151 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 ZNF587BE7ETH6 402 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 PRR23D1E9PI22 279 aaPredicted RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 H0YAE9 185 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 MSTNO14793 375 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 EEF1E1O43324 174 aaKnown RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 TLX2O43763 284 aaPredicted RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 CLIC3O95833 236 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 PRR23D2P0DMB1 279 aaPredicted RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 NR2C1P13056 603 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 PAICSP22234 425 aaKnown RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 ROR2Q01974 943 aaKnown RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 FMODQ06828 376 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 FAPQ12884 760 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 HIST3H3Q16695 136 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 ABHD12BQ7Z5M8 362 aaPredicted RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 LUZP2Q86TE4 346 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 CPOQ8IVL8 374 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 DEPDC4Q8N2C3 294 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 RELL2Q8NC24 303 aaPredicted RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 TFAP2CQ92754 450 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 UBE2FQ969M7 185 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 MCHR2Q969V1 340 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 NMD3Q96D46 503 aaKnown RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 ALKBH3Q96Q83 286 aaPredicted RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 IL4I1Q96RQ9 567 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 APOL4Q9BPW4 351 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 FN3KQ9H479 309 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 RERGLQ9H628 205 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 GPR35Q9HC97 309 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 SRA1Q9HD15 236 aaKnown RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 RPRD1BQ9NQG5 326 aaKnown RBP10.8□□□□□ -0.68
SDC1-206ENST00000482879 ASB6Q9NWX5 421 aa10.8□□□□□ -0.68
SDC1-206ENST00000482879 FAM183AA6NL82 134 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 A8MXE2 369 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 DHHO43323 396 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 SLC16A7O60669 478 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 ZG16O60844 167 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 CNOT4O95628 575 aaKnown RBP10.79□□□□□ -0.68
SDC1-206ENST00000482879 PLA2G2AP14555 144 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 CRABP1P29762 137 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 EFNB1P98172 346 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 SLC25A35Q3KQZ1 300 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 C9orf135Q5VTT2 229 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 ZNF691Q5VV52 312 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 PLBD1Q6P4A8 553 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 SLC25A47Q6Q0C1 308 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 ZNF474Q6S9Z5 364 aaPredicted RBP10.79□□□□□ -0.68
SDC1-206ENST00000482879 Q6ZT83 130 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 BEND4Q6ZU67 534 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 LINGO2Q7L985 606 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 CXXC5Q7LFL8 322 aaKnown RBP10.79□□□□□ -0.68
SDC1-206ENST00000482879 MRGPRGQ86SM5 289 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 OR8J1Q8NGP2 316 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 OR9Q1Q8NGQ5 310 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 LILRB4Q8NHJ6 448 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 TMEM163Q8TC26 289 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 TRUB1Q8WWH5 349 aaKnown RBP10.79□□□□□ -0.68
SDC1-206ENST00000482879 NSMAFQ92636 917 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 PTP4A1Q93096 173 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 MUS81Q96NY9 551 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 TSSK2Q96PF2 358 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 ZNF184Q99676 751 aaPredicted RBP10.79□□□□□ -0.68
SDC1-206ENST00000482879 RBM24Q9BX46 236 aaKnown RBP10.79□□□□□ -0.68
SDC1-206ENST00000482879 NUAK2Q9H093 628 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 MED20Q9H944 212 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 CRLF2Q9HC73 371 aa10.79□□□□□ -0.68
SDC1-206ENST00000482879 HINT3Q9NQE9 182 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms