RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 INTS11Q5TA45 600 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 C11orf71Q6IPW1 123 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 ANKRD16Q6P6B7 361 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF613Q6PF04 617 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 B3GLCTQ6Y288 498 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 LINGO2Q7L985 606 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 PATL1Q86TB9 770 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 UEVLDQ8IX04 471 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 KDM8Q8N371 416 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 GPR137CQ8N3F9 429 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 C10orf53Q8N6V4 93 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 SCAIQ8N9R8 606 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 SMYD1Q8NB12 490 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 PIK3C3Q8NEB9 887 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 OR10A6Q8NH74 314 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 IL17DQ8TAD2 202 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 MAGEE2Q8TD90 523 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC26A7Q8TE54 656 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 RASSF5Q8WWW0 418 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 BCL2L2Q92843 193 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 NEIL1Q96FI4 390 aaPredicted RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC38A2Q96QD8 506 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 MCHR1Q99705 422 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 ARHGDIGQ99819 225 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 SH3GL1Q99961 368 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 TMEM43Q9BTV4 400 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 KATNB1Q9BVA0 655 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 TMEM120AQ9BXJ8 343 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 CACNG6Q9BXT2 260 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 KAT8Q9H7Z6 458 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 B3GAT1Q9P2W7 334 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 SEC14L4Q9UDX3 406 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 MOKQ9UQ07 419 aa5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 FN1P02751 2386 aaKnown RBP5.92□□□□□ -1.46
CCDC88A-213ENST00000476903 IGHV1-18A0A0C4DH31 117 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 CPSF4LA6NMK7 179 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 BBIP1A8MTZ0 92 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 ATP6V1G2-DDX39BF2Z307 99 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 MS4A18H0YCH9 400 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 H7C417 338 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 FBP2O00757 339 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 TRAF3IP2O43734 574 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 CHP2O43745 196 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 SSX4O60224 188 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 TPST2O60704 377 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 NDUFS7O75251 213 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 MT-ATP6P00846 226 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 NPPAP01160 153 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 CRYAAP02489 173 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 BGLAPP02818 100 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 OPN1SWP03999 348 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 PTNP21246 168 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 APOBEC3AP31941 199 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 ARFIP2P53365 341 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 DSCR9P59020 149 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 CHRNB3Q05901 458 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 PUDPQ08623 228 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 PMS2P3Q13401 168 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 RAB35Q15286 201 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 MAPRE2Q15555 327 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 DUSP7Q16829 419 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 MS4A18Q3C1V0 323 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 MMEL1Q495T6 779 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 HSP90B2PQ58FF3 399 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 COQ5Q5HYK3 327 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 ENTPD8Q5MY95 495 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 NANOGP8Q6NSW7 305 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 TTC33Q6PID6 262 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 SNX32Q86XE0 403 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 GPR32P1Q8NGA4 272 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 OR8J3Q8NGG0 315 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 OR6T1Q8NGN1 323 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 NEU4Q8WWR8 484 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 LRRC58Q96CX6 371 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 SLC41A3Q96GZ6 507 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 MOGAT1Q96PD6 335 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 OR2M2Q96R28 347 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 WFDC6Q9BQY6 131 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 RHNO1Q9BSD3 238 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 REG4Q9BYZ8 158 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 NANOGQ9H9S0 305 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 CRLF2Q9HC73 371 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 GPR35Q9HC97 309 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 B3GAT2Q9NPZ5 323 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 FGFR1OP2Q9NVK5 253 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 MRPL39Q9NYK5 338 aaKnown RBP5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 CRNNQ9UBG3 495 aaPredicted RBP5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 NOX1Q9Y5S8 564 aa5.91□□□□□ -1.46
CCDC88A-213ENST00000476903 TRAPPC13A5PLN9 417 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF726A6NNF4 738 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 ZNF99A8MXY4 864 aaPredicted RBP5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 INAFM1C9JVW0 142 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 M0R3G1 203 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 PLPP3O14495 311 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 MRASO14807 208 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 OR6A2O95222 327 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 HPRP00739 348 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 IGKV3-15P01624 115 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 IGLV1-44P01699 117 aa5.9□□□□□ -1.46
CCDC88A-213ENST00000476903 CSF3P09919 207 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms