RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 ZNF519Q8TB69 540 aa13.36□□□□□ -0.27
SDC3-203ENST00000471567 HDAC2Q92769 488 aaKnown RBP13.36□□□□□ -0.27
SDC3-203ENST00000471567 NMD3Q96D46 503 aaKnown RBP13.36□□□□□ -0.27
SDC3-203ENST00000471567 RADILQ96JH8 1075 aa13.36□□□□□ -0.27
SDC3-203ENST00000471567 TSPAN32Q96QS1 320 aa13.36□□□□□ -0.27
SDC3-203ENST00000471567 SMURF2Q9HAU4 748 aa13.36□□□□□ -0.27
SDC3-203ENST00000471567 NRIP3Q9NQ35 241 aa13.36□□□□□ -0.27
SDC3-203ENST00000471567 CCM2LQ9NUG4 571 aaPredicted RBP13.36□□□□□ -0.27
SDC3-203ENST00000471567 CRNNQ9UBG3 495 aaPredicted RBP13.36□□□□□ -0.27
SDC3-203ENST00000471567 GRHPRQ9UBQ7 328 aa13.36□□□□□ -0.27
SDC3-203ENST00000471567 ST6GALNAC2Q9UJ37 374 aa13.36□□□□□ -0.27
SDC3-203ENST00000471567 SAMHD1Q9Y3Z3 626 aaKnown RBP13.36□□□□□ -0.27
SDC3-203ENST00000471567 APEHP13798 732 aaKnown RBP13.35□□□□□ -0.27
SDC3-203ENST00000471567 CD40P25942 277 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 ZNF84P51523 738 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 FXYD6P3P58550 94 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 MICAQ29983 383 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 RFX4Q33E94 735 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 NRN1LQ496H8 165 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 THEM4Q5T1C6 240 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 C10orf128Q5T292 105 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 ZNF770Q6IQ21 691 aaPredicted RBP13.35□□□□□ -0.27
SDC3-203ENST00000471567 PAMR1Q6UXH9 720 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 FAM122BQ7Z309 247 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 SYT14Q8NB59 555 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 NRGNQ92686 78 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 RBP7Q96R05 134 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 C1QTNF6Q9BXI9 259 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 LIME1Q9H400 295 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 DENND2DQ9H6A0 471 aaPredicted RBP13.35□□□□□ -0.27
SDC3-203ENST00000471567 TMEM38BQ9NVV0 291 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 VNN3Q9NY84 501 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 POLQO75417 2590 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 TACC2O95359 2948 aa13.35□□□□□ -0.27
SDC3-203ENST00000471567 AKAP6Q13023 2319 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 M0R1B8 84 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 GNGT2O14610 69 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 FKBP6O75344 327 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 TXNDC12O95881 172 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 PLAUP00749 431 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 RAF1P04049 648 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 OR8G3PP0DMU2 310 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 CBR1P16152 277 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 DNASE1P24855 282 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 ARR3P36575 388 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 RPS6KA3P51812 740 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 MYBPC1Q00872 1141 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 C1orf146Q5VVC0 180 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 RPL13AP3Q6NVV1 102 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 THSD4Q6ZMP0 1018 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 C20orf204Q6ZNR8 217 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 OR9Q2Q8NGE9 314 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 FANK1Q8TC84 345 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 NANOS1Q8WY41 292 aaKnown RBP13.34□□□□□ -0.27
SDC3-203ENST00000471567 Q96M85 177 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 ZNF570Q96NI8 536 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 SLC38A2Q96QD8 506 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 OR52D1Q9H346 318 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 ADAM18Q9Y3Q7 739 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 U3KQV3 271 aa13.34□□□□□ -0.27
SDC3-203ENST00000471567 CADP27708 2225 aa13.33□□□□□ -0.27
SDC3-203ENST00000471567 PDZD2O15018 2839 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 HRNRQ86YZ3 2850 aaPredicted RBP13.33□□□□□ -0.28
SDC3-203ENST00000471567 ARRDC5A6NEK1 342 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 XKRYO14609 159 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 ABCD4O14678 606 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 IMPA2O14732 288 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 HS3ST1O14792 307 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 ARPC3O15145 178 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 ARHGEF9O43307 516 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 CIB2O75838 187 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 SEC14L2O76054 403 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 FARS2O95363 451 aaKnown RBP13.33□□□□□ -0.28
SDC3-203ENST00000471567 GASTP01350 101 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 IGKV3-15P01624 115 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 IGLV1-44P01699 117 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 B4GALT1P15291 398 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 SDHAP31040 664 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 SLC6A6P31641 620 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 CD47Q08722 323 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 PPP1R8Q12972 351 aaKnown RBP13.33□□□□□ -0.28
SDC3-203ENST00000471567 SLC25A47Q6Q0C1 308 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 ZNF620Q6ZNG0 422 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 DPPA2Q7Z7J5 298 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 DEPDC4Q8N2C3 294 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 SLC22A24Q8N4F4 322 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 ZNF611Q8N823 705 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 LILRB1Q8NHL6 650 aaPredicted RBP13.33□□□□□ -0.28
SDC3-203ENST00000471567 AKAP1Q92667 903 aaKnown RBP eCLIP13.33□□□□□ -0.28
SDC3-203ENST00000471567 SLCO4A1Q96BD0 722 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 DGCR6LQ9BY27 220 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 UBTD1Q9HAC8 227 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 B3GNT2Q9NY97 397 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 DNAJB9Q9UBS3 223 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 IER3IP1Q9Y5U9 82 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 TEX15Q9BXT5 2789 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 ROS1P08922 2347 aa13.33□□□□□ -0.28
SDC3-203ENST00000471567 ANKRD17O75179 2603 aaKnown RBP13.32□□□□□ -0.28
SDC3-203ENST00000471567 IGHV1-18A0A0C4DH31 117 aa13.32□□□□□ -0.28
SDC3-203ENST00000471567 TEX13CA0A0J9YWL9 993 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms