RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 HIST3H3Q16695 136 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 CHRFAM7AQ494W8 412 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 CYBRD1Q53TN4 286 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 C6orf52Q5T4I8 152 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 CGB2Q6NT52 195 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 SPATA21Q7Z572 469 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 NANOGNBQ7Z5D8 188 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 ARPINQ7Z6K5 226 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 MYPOPQ86VE0 399 aaPredicted RBP6.29□□□□□ -1.4
PTPRF-210ENST00000463041 WDFY1Q8IWB7 410 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 MICU2Q8IYU8 434 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 ZNF786Q8N393 782 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 OR2T12Q8NG77 320 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 OR1J2Q8NGS2 313 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 UBASH3BQ8TF42 649 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 LZICQ8WZA0 190 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 MCHR2Q969V1 340 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 SGTBQ96EQ0 304 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 MRPL13Q9BYD1 178 aaKnown RBP6.29□□□□□ -1.4
PTPRF-210ENST00000463041 MS4A5Q9H3V2 200 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 C1orf198Q9H425 327 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 EFCAB1Q9HAE3 211 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 NOX3Q9HBY0 568 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 MED4Q9NPJ6 270 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 INIPQ9NRY2 104 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 ZNF446Q9NWS9 450 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 ZNF224Q9NZL3 707 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 CDC42EP3Q9UKI2 254 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 MED31Q9Y3C7 131 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 CAPN7Q9Y6W3 813 aa6.29□□□□□ -1.4
PTPRF-210ENST00000463041 SVEP1Q4LDE5 3571 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 SH3PXD2BA1X283 911 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 NPIPB13A6NJU9 1138 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 NPIPB4C9JG80 1138 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 NDUFAB1O14561 156 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 ATP8B1O43520 1251 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 LMX1BO60663 402 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 TRMUO75648 421 aaKnown RBP6.28□□□□□ -1.4
PTPRF-210ENST00000463041 F13BP05160 661 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 ADRA2AP08913 450 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 IGHV4-31P0DP07 118 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 DAOP14920 347 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 B4GALT1P15291 398 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 ZNF23P17027 643 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 TNFRSF1BP20333 461 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 MDH1P40925 334 aaKnown RBP6.28□□□□□ -1.4
PTPRF-210ENST00000463041 AQP2P41181 271 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 OR1E2P47887 323 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 DAP3P51398 398 aaKnown RBP6.28□□□□□ -1.4
PTPRF-210ENST00000463041 ZNF133P52736 654 aaPredicted RBP6.28□□□□□ -1.4
PTPRF-210ENST00000463041 CLRN1P58418 232 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 SELENOVP59797 346 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 RPS23P62266 143 aaKnown RBP6.28□□□□□ -1.4
PTPRF-210ENST00000463041 GUCY1A3Q02108 690 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 PLP2Q04941 152 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 RPL18Q07020 188 aaKnown RBP6.28□□□□□ -1.4
PTPRF-210ENST00000463041 GGTLC2Q14390 218 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 MELKQ14680 651 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 RAB39AQ14964 217 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 TAF11Q15544 211 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 FXNQ16595 210 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 ANKDD1AQ495B1 522 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 SLC36A2Q495M3 483 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 IQCCQ4KMZ1 466 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 GKAP1Q5VSY0 366 aaPredicted RBP6.28□□□□□ -1.4
PTPRF-210ENST00000463041 KRT80Q6KB66 452 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 TMEM53Q6P2H8 277 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 UGT2A3Q6UWM9 527 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 DEF8Q6ZN54 512 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 SLC15A3Q8IY34 581 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 RNF113BQ8IZP6 322 aaKnown RBP6.28□□□□□ -1.4
PTPRF-210ENST00000463041 SVOPLQ8N434 492 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 ANKS4BQ8N8V4 417 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 PFN4Q8NHR9 129 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 FNDC8Q8TC99 324 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 TMEM255BQ8WV15 326 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 MRPL24Q96A35 216 aaKnown RBP6.28□□□□□ -1.4
PTPRF-210ENST00000463041 RCN3Q96D15 328 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 MS4A3Q96HJ5 214 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 TPD52L3Q96J77 140 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 RBP7Q96R05 134 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 SEPHS2Q99611 448 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 MDFIQ99750 246 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 SH3GL3Q99963 347 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 BEX2Q9BXY8 128 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 LRMDAQ9H2I8 198 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 KCNN2Q9H2S1 579 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 TXNIPQ9H3M7 391 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 RNF121Q9H920 327 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 SIAEQ9HAT2 523 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 DYNLRB1Q9NP97 96 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 TMEM38BQ9NVV0 291 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 CMTM6Q9NX76 183 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 LPAR3Q9UBY5 353 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 REV1Q9UBZ9 1251 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 SLC7A8Q9UHI5 535 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 GPR160Q9UJ42 338 aa6.28□□□□□ -1.4
PTPRF-210ENST00000463041 CUBNO60494 3623 aa6.27□□□□□ -1.4
PTPRF-210ENST00000463041 IQCMA0A1B0GVH7 501 aa6.27□□□□□ -1.41
PTPRF-210ENST00000463041 GMNCA6NCL1 334 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms