RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 MPP4Q96JB8 637 aa13.21□□□□□ -0.29
SKA3-204ENST00000462482 ZNF75AQ96N20 296 aa13.21□□□□□ -0.29
SKA3-204ENST00000462482 ARHGDIGQ99819 225 aa13.21□□□□□ -0.29
SKA3-204ENST00000462482 EBF4Q9BQW3 602 aa13.21□□□□□ -0.29
SKA3-204ENST00000462482 RSPO3Q9BXY4 272 aaPredicted RBP13.21□□□□□ -0.29
SKA3-204ENST00000462482 SLC19A3Q9BZV2 496 aa13.21□□□□□ -0.29
SKA3-204ENST00000462482 KCNN2Q9H2S1 579 aa13.21□□□□□ -0.29
SKA3-204ENST00000462482 SLCO1B3Q9NPD5 702 aa13.21□□□□□ -0.29
SKA3-204ENST00000462482 ZNF275Q9NSD4 429 aaPredicted RBP13.21□□□□□ -0.29
SKA3-204ENST00000462482 TREM2Q9NZC2 230 aa13.21□□□□□ -0.29
SKA3-204ENST00000462482 TAAR3PQ9P1P4 343 aa13.21□□□□□ -0.29
SKA3-204ENST00000462482 CUBNO60494 3623 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 TRAPPC13A5PLN9 417 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 MCIDASD6RGH6 385 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 M0QX08 132 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 KPNA4O00629 521 aaPredicted RBP13.2□□□□□ -0.3
SKA3-204ENST00000462482 ZNF500O60304 480 aaPredicted RBP13.2□□□□□ -0.3
SKA3-204ENST00000462482 TPST2O60704 377 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 IGHG1P01857 330 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 PATE4P0C8F1 98 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 FAM157BP0CG42 384 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 NAT2P11245 290 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 CD247P20963 164 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 DRD4P21917 467 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 RAD52P43351 418 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 CLRN1P58418 232 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 MYBPC1Q00872 1141 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 ZNF74Q16587 644 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 MSMPQ1L6U9 139 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 RUNDC3AQ59EK9 446 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 ENTPD8Q5MY95 495 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 INTS11Q5TA45 600 aaKnown RBP13.2□□□□□ -0.3
SKA3-204ENST00000462482 AGBL2Q5U5Z8 902 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 SLC16A14Q7RTX9 510 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 NANOGNBQ7Z5D8 188 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 MEX3DQ86XN8 651 aaKnown RBP13.2□□□□□ -0.3
SKA3-204ENST00000462482 VANGL1Q8TAA9 524 aaPredicted RBP13.2□□□□□ -0.3
SKA3-204ENST00000462482 ADAMTS16Q8TE57 1224 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 ZFAND2BQ8WV99 257 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 RASSF5Q8WWW0 418 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 LRRC37BQ96QE4 947 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 SH3GL3Q99963 347 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 CPPED1Q9BRF8 314 aaPredicted RBP13.2□□□□□ -0.3
SKA3-204ENST00000462482 BCL2L14Q9BZR8 327 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 IKZF5Q9H5V7 419 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 HINT3Q9NQE9 182 aaKnown RBP13.2□□□□□ -0.3
SKA3-204ENST00000462482 TMEM38BQ9NVV0 291 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 ZNF224Q9NZL3 707 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 ZNF229Q9UJW7 825 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 NDUFAF1Q9Y375 327 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 ARFGEF3Q5TH69 2177 aa13.2□□□□□ -0.3
SKA3-204ENST00000462482 TRAV20A0A0B4J274 112 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 A0A1W2PRG6 482 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 TPD52L2O43399 206 aaKnown RBP13.19□□□□□ -0.3
SKA3-204ENST00000462482 MGRN1O60291 552 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 OPN1SWP03999 348 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 QDPRP09417 244 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 GAAP10253 952 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 ACTG1P63261 375 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 MELKQ14680 651 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 DUSP7Q16829 419 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 ALKBH6Q3KRA9 238 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 FAHD2BQ6P2I3 314 aaPredicted RBP13.19□□□□□ -0.3
SKA3-204ENST00000462482 LINC00114Q6XXX2 140 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 ICA1LQ8NDH6 482 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 OR4K5Q8NGD3 323 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 OR6T1Q8NGN1 323 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 ZNF519Q8TB69 540 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 RAB39BQ96DA2 213 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 FAHD2AQ96GK7 314 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 WFDC6Q9BQY6 131 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 SLC52A3Q9NQ40 469 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 DECR2Q9NUI1 292 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 TAS2R5Q9NYW4 299 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 MYEF2Q9P2K5 600 aaKnown RBP13.19□□□□□ -0.3
SKA3-204ENST00000462482 SLC7A7Q9UM01 511 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 TRIM33Q9UPN9 1127 aa13.19□□□□□ -0.3
SKA3-204ENST00000462482 C17orf100A8MU93 164 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 BLOC1S5-TXNDC5H3BN57 136 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 APLNRP35414 380 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 PCBP3P57721 371 aaKnown RBP13.18□□□□□ -0.3
SKA3-204ENST00000462482 HSF2Q03933 536 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 NFYCQ13952 458 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 NPTX1Q15818 432 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 NRN1LQ496H8 165 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 ACSM5Q6NUN0 579 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 LRFN4Q6PJG9 635 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 UNQ6126/PRO20091Q6UXV3 157 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 DLEU7Q6UYE1 221 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 WDR88Q6ZMY6 472 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 DEF8Q6ZN54 512 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 CARM1Q86X55 608 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.18□□□□□ -0.3
SKA3-204ENST00000462482 RBM15BQ8NDT2 890 aaKnown RBP13.18□□□□□ -0.3
SKA3-204ENST00000462482 YIPF5Q969M3 257 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 TIMD4Q96H15 378 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 CGREF1Q99674 301 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 RACGAP1Q9H0H5 632 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 OR51B6Q9H340 312 aa13.18□□□□□ -0.3
SKA3-204ENST00000462482 STX18Q9P2W9 335 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms