RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 RHNO1Q9BSD3 238 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 WDR55Q9H6Y2 383 aaPredicted RBP6.33□□□□□ -1.4
USP54-208ENST00000461520 RMND5AQ9H871 391 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 SLC7A10Q9NS82 523 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 THUMPD1Q9NXG2 353 aaKnown RBP6.33□□□□□ -1.4
USP54-208ENST00000461520 ZIM2Q9NZV7 527 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 AMDHD2Q9Y303 409 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 USF3Q68DE3 2245 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 NUP214P35658 2090 aaPredicted RBP6.32□□□□□ -1.4
USP54-208ENST00000461520 A0A096LPI6 279 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 A0A1W2PR80 420 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 TMEM120BA0PK00 339 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 TMEM247A6NEH6 219 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 LIPT2A6NK58 231 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 AQP7P3A6NL99 342 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 RNF212BA8MTL3 300 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 A8MVM7 634 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 H7C417 338 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 M0R1B8 84 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 SSX4O60224 188 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ZNF500O60304 480 aaPredicted RBP6.32□□□□□ -1.4
USP54-208ENST00000461520 VAMP5O95183 116 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ANP32DO95626 131 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 BCHEP06276 602 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 TFPTP0C1Z6 253 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 KITP10721 976 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ETFAP13804 333 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 PAX7P23759 505 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 MPGP29372 298 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ACAA2P42765 397 aaKnown RBP6.32□□□□□ -1.4
USP54-208ENST00000461520 CRATP43155 626 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 FABP6P51161 128 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 NUDT6P53370 316 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 DSCR9P59020 149 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 DSTNP60981 165 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 COPZ1P61923 177 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 CEACAM7Q14002 265 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 LARS2Q15031 903 aaKnown RBP6.32□□□□□ -1.4
USP54-208ENST00000461520 RAB35Q15286 201 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 OR7A5Q15622 319 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 OTUD3Q5T2D3 398 aaPredicted RBP6.32□□□□□ -1.4
USP54-208ENST00000461520 TSPO2Q5TGU0 170 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 RNF220Q5VTB9 566 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 NXNQ6DKJ4 435 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 WBP2NLQ6ICG8 309 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ZNF836Q6ZNA1 936 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 AAED1Q7RTV5 226 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ABHD12BQ7Z5M8 362 aaPredicted RBP6.32□□□□□ -1.4
USP54-208ENST00000461520 VRK2Q86Y07 508 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 FBXL14Q8N1E6 418 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 TMEM99Q8N816 258 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ZIC4Q8N9L1 334 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 WDR31Q8NA23 367 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 OR9K2Q8NGE7 335 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 SLC38A5Q8WUX1 472 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ZBTB9Q96C00 473 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ITCHQ96J02 903 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 TAPBPLQ9BX59 468 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 CACNG6Q9BXT2 260 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 ARMC7Q9H6L4 198 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 FKRPQ9H9S5 495 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 TPT1P8Q9HAU6 139 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 OBP2BQ9NPH6 170 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 SLC17A5Q9NRA2 495 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 SDR39U1Q9NRG7 319 aaPredicted RBP6.32□□□□□ -1.4
USP54-208ENST00000461520 SLC6A13Q9NSD5 602 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 IFT52Q9Y366 437 aa6.32□□□□□ -1.4
USP54-208ENST00000461520 FREM1Q5H8C1 2179 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 A0A0G2JPF8 293 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 OR6C65A6NJZ3 312 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 HNRNPCL2B2RXH8 293 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 HNRNPCL3B7ZW38 293 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 H0YIZ8 118 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 KLF11O14901 512 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 UBDO15205 165 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 HNRNPCL1O60812 293 aaKnown RBP6.31□□□□□ -1.4
USP54-208ENST00000461520 NPIPB7O75200 414 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 AKR7A3O95154 331 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 IL6RP08887 468 aaPredicted RBP6.31□□□□□ -1.4
USP54-208ENST00000461520 GKN3PP0CG01 181 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 HNRNPCL4P0DMR1 293 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 NCF2P19878 526 aaPredicted RBP6.31□□□□□ -1.4
USP54-208ENST00000461520 PTNP21246 168 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 POLR2JP52435 117 aaKnown RBP6.31□□□□□ -1.4
USP54-208ENST00000461520 PRPS1P60891 318 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 IRX1P78414 480 aaPredicted RBP6.31□□□□□ -1.4
USP54-208ENST00000461520 CHRNB3Q05901 458 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 SPOCK1Q08629 439 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 SLC9B1Q4ZJI4 515 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 KHDC1LQ5JSQ8 128 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 C9orf135Q5VTT2 229 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 C1orf140Q5VVS0 124 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 PRAMEF8Q5VWM4 474 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 PRAMEF7Q5VXH5 474 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 TMEM225Q6GV28 225 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 HMBOX1Q6NT76 420 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 KLHL24Q6TFL4 600 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 CLEC2AQ6UVW9 174 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 B3GLCTQ6Y288 498 aa6.31□□□□□ -1.4
USP54-208ENST00000461520 GPAT4Q86UL3 456 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms