RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 OR6C3Q9NZP0 311 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 COPS7AQ9UBW8 275 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 PITPNC1Q9UKF7 332 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 TMEM184BQ9Y519 407 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 UBIAD1Q9Y5Z9 338 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 MYH6P13533 1939 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 ATG2AQ2TAZ0 1938 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 OR6C68A6NDL8 312 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 NPEPPSL1A6NEC2 478 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 C1orf196B1AJZ1 125 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 B5MCH6 92 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 C5orf58C9J3I9 102 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 ANKRD63C9JTQ0 380 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 H0Y980 276 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 RGS14O43566 566 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 NARSO43776 548 aaKnown RBP4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 XPNPEP2O43895 674 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 RGS11O94810 467 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 PAPSS2O95340 614 aaPredicted RBP4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 MOCS3O95396 460 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 FGF19O95750 216 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 SERPIND1P05546 499 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 CRYBA1P05813 215 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 BPGMP07738 259 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 AKR1C4P17516 323 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 PVALBP20472 110 aaPredicted RBP4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 LIPAP38571 399 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 RPS9P46781 194 aaKnown RBP4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 EFNA5P52803 228 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 OR4D2P58180 307 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 UBE2KP61086 200 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 HSF1Q00613 529 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 FABP9Q0Z7S8 132 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 FUT7Q11130 342 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 MRPL23Q16540 153 aaKnown RBP4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF181Q2M3W8 571 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM74A1Q5RGS3 127 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 SAMD13Q5VXD3 122 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 OR52W1Q6IF63 320 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 CCDC144NLQ6NUI1 221 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 ANKRD54Q6NXT1 300 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 TCF24Q7RTU0 167 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 DHDDSQ86SQ9 333 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 NAA40Q86UY6 237 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 TRAPPC5Q8IUR0 188 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 DAW1Q8N136 415 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 LYG1Q8N1E2 194 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 OR2T11Q8NH01 316 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 OR4Q3Q8NH05 313 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 OR4S2Q8NH73 311 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 TBCKQ8TEA7 893 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 PHF10Q8WUB8 498 aaKnown RBP4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 PIH1D2Q8WWB5 315 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 ARSGQ96EG1 525 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 MTERF1Q99551 399 aaKnown RBP4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 URM1Q9BTM9 101 aaKnown RBP4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 RBM24Q9BX46 236 aaKnown RBP4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 EPB41L4BQ9H329 900 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 POLE4Q9NR33 117 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 GKN1Q9NS71 199 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 OLAHQ9NV23 265 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC17A6Q9P2U8 582 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 KIF25Q9UIL4 384 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 FBXL2Q9UKC9 423 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 TBX21Q9UL17 535 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 ZFP30Q9Y2G7 519 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 MTCH2Q9Y6C9 303 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 BRWD1Q9NSI6 2320 aa4.34□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM150BA6NC51 233 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 MYADML2A6NDP7 307 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 G3V3Y1 287 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 H0YIG0 161 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 MAGEB4O15481 346 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 PPIHO43447 177 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SSNA1O43805 119 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 UPK1BO75841 260 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CEACAM4O75871 244 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 OR4F21O95013 312 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 IFNA7P01567 189 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ITGB2P05107 769 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 RAB40ALP0C0E4 278 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ST6GAL1P15907 406 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 BCKDHBP21953 392 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 RBMS1P29558 406 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TTPAP49638 278 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ASCL1P50553 236 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TNFSF10P50591 281 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TMBIM6P55061 237 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 UCNP55089 124 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 FOXL2P58012 376 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 RPL32P62910 135 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 PPP3R1P63098 170 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ARHGAP1Q07960 439 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CD47Q08722 323 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF155Q12901 538 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 FZD5Q13467 585 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 RUNX2Q13950 521 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ABRAXAS2Q15018 415 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 PTGES3Q15185 160 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 INPP5JQ15735 1006 aaPredicted RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms