RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SOX15O60248 233 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 AK4P27144 223 aaPredicted RBP2.31□□□□□ -2.04
USP40-209ENST00000452724 RORCP51449 518 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 ACTA2P62736 377 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 ACTC1P68032 377 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 ZNF92Q03936 586 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 GK3PQ14409 553 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 C19orf35Q6ZS72 473 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 SLC25A48Q6ZT89 311 aaKnown RBP2.31□□□□□ -2.04
USP40-209ENST00000452724 STRADAQ7RTN6 431 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 ABHD12BQ7Z5M8 362 aaPredicted RBP2.31□□□□□ -2.04
USP40-209ENST00000452724 ZNF695Q8IW36 515 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 SDR9C7Q8NEX9 313 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 OR4F6Q8NGB9 312 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 STMN2Q93045 179 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 WFIKKN1Q96NZ8 548 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 ZBTB18Q99592 522 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 SH3GL3Q99963 347 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 NT5C3AQ9H0P0 336 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 SHPKQ9UHJ6 478 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 MROH7-TTC4A0A0A0MT08 1334 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 KANK1Q14678 1352 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 IGHV3-66A0A0C4DH42 116 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 FAM240BA0A1B0GVZ2 78 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 INS-IGF2F8WCM5 200 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 GOSR2O14653 212 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 KMOO15229 486 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 ENTPD5O75356 428 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 CTDNEP1O95476 244 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 TMEM50AO95807 157 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 TLX1NBP0CAT3 122 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 PMELP40967 661 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 PRPSAP1Q14558 356 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 CTSL3PQ5NE16 218 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 PHYHD1Q5SRE7 291 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 ZNF493Q6ZR52 646 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 FAM92BQ6ZTR7 304 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 TMEM179Q6ZVK1 233 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 TMEM135Q86UB9 458 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 EGFL6Q8IUX8 553 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 STPG2Q8N412 459 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 CEP112Q8N8E3 955 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 OR10G4Q8NGN3 311 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 UBALD1Q8TB05 177 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 TMEM54Q969K7 222 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 LINC00597Q9H2U6 94 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 NTN4Q9HB63 628 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 ZNF282Q9UDV7 671 aaPredicted RBP2.3□□□□□ -2.04
USP40-209ENST00000452724 SLC7A8Q9UHI5 535 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 KIAA1257Q9ULG3 409 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 TMCC3Q9ULS5 477 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 MN1Q10571 1320 aaPredicted RBP2.3□□□□□ -2.04
USP40-209ENST00000452724 CENPJQ9HC77 1338 aaPredicted RBP2.3□□□□□ -2.04
USP40-209ENST00000452724 SLIT3O75094 1523 aa2.3□□□□□ -2.04
USP40-209ENST00000452724 WDR62O43379 1518 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 TRAV39A0A0B4J263 110 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 IGHV5-51A0A0C4DH38 117 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 HIDE1A8MVS5 230 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 TCP11X1B4DZS4 312 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 H0YHG0 523 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 EIF3GO75821 320 aaKnown RBP eCLIP2.29□□□□□ -2.04
USP40-209ENST00000452724 C6orf47O95873 294 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 MRPL3P09001 348 aaKnown RBP2.29□□□□□ -2.04
USP40-209ENST00000452724 PRPS2P11908 318 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 PGAM1P18669 254 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 MX1P20591 662 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 KITLGP21583 273 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 SERPINB5P36952 375 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 CYB561P49447 251 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 TPMTP51580 245 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 RPL23AP62750 156 aaKnown RBP2.29□□□□□ -2.04
USP40-209ENST00000452724 KCNJ2P63252 427 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 PON3Q15166 354 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 LY6G6FQ5SQ64 297 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 HES5Q5TA89 166 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 Q6ZR03 302 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 RUFY3Q7L099 469 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 PGAM4Q8N0Y7 254 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 TTC5Q8N0Z6 440 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 ZNF561Q8N587 486 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 OR2A5Q96R48 311 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 NDFIP1Q9BT67 221 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 RPF2Q9H7B2 306 aaKnown RBP2.29□□□□□ -2.04
USP40-209ENST00000452724 HYPKQ9NX55 129 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 EXTL2Q9UBQ6 330 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 SUN2Q9UH99 717 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 IKZF2Q9UKS7 526 aa2.29□□□□□ -2.04
USP40-209ENST00000452724 YTHDF2Q9Y5A9 579 aaKnown RBP2.29□□□□□ -2.04
USP40-209ENST00000452724 A0A1W2PQ67 120 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 ARHGEF35A5YM69 484 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 TMEM150BA6NC51 233 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 DYNC1I1O14576 645 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 CDKN1BP46527 198 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 RFX3P48380 749 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 ZMYND11Q15326 602 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 C5orf47Q569G3 176 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 VAX1Q5SQQ9 334 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 ABHD13Q7L211 337 aa2.28□□□□□ -2.04
USP40-209ENST00000452724 NBPF5PQ86XG9 351 aaPredicted RBP2.28□□□□□ -2.04
USP40-209ENST00000452724 C15orf56Q8N910 161 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms