RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZNF587BE7ETH6 402 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 E9PQ18 207 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 M0R3G1 203 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 SURF4O15260 269 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 SLC16A6O15403 523 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 CDC42P60953 191 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 LGALS3BPQ08380 585 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 FAPQ12884 760 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 SNAPC1Q16533 368 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 PHYHD1Q5SRE7 291 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 ZNF362Q5T0B9 420 aaPredicted RBP13.93□□□□□ -0.18
USP40-206ENST00000443711 THEM4Q5T1C6 240 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 TTC23Q5W5X9 447 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 Q6ZT83 130 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 PTCHD4Q6ZW05 846 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 LUZP2Q86TE4 346 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 SLC37A3Q8NCC5 494 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 NPEPL1Q8NDH3 523 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 SDR9C7Q8NEX9 313 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 NMNAT3Q96T66 252 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 ULBP2Q9BZM5 246 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 GPR35Q9HC97 309 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 ASB6Q9NWX5 421 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 VSX1Q9NZR4 365 aaPredicted RBP13.93□□□□□ -0.18
USP40-206ENST00000443711 MALT1Q9UDY8 824 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 GMPPBQ9Y5P6 360 aa13.93□□□□□ -0.18
USP40-206ENST00000443711 LOC100130705A0A1B0GUX0 176 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 RPL36A-HNRNPH2H7BZ11 118 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 H7C1C5 153 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 AGFG2O95081 481 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 SLC2A10O95528 541 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 QDPRP09417 244 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 ZNF3P17036 446 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 PAICSP22234 425 aaKnown RBP13.92□□□□□ -0.18
USP40-206ENST00000443711 GGT2P36268 569 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 ASCL1P50553 236 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 ZNF133P52736 654 aaPredicted RBP13.92□□□□□ -0.18
USP40-206ENST00000443711 LCN6P62502 163 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 ROR2Q01974 943 aaKnown RBP13.92□□□□□ -0.18
USP40-206ENST00000443711 STK11Q15831 433 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 LRFN4Q6PJG9 635 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 CYGBQ8WWM9 190 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 ITLN2Q8WWU7 325 aaPredicted RBP13.92□□□□□ -0.18
USP40-206ENST00000443711 MCHR2Q969V1 340 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 NMD3Q96D46 503 aaKnown RBP13.92□□□□□ -0.18
USP40-206ENST00000443711 LRRC46Q96FV0 321 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 DDOQ99489 341 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 PITX2Q99697 317 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 CRLF2Q9HC73 371 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 KCNJ16Q9NPI9 418 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 ELOVL5Q9NYP7 299 aa13.92□□□□□ -0.18
USP40-206ENST00000443711 NDRG4Q9ULP0 352 aaKnown RBP13.92□□□□□ -0.18
USP40-206ENST00000443711 OR6C68A6NDL8 312 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 FAM90A27PA6NNH2 459 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 H0YAE9 185 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 DHHO43323 396 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 MPGP29372 298 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 CRABP1P29762 137 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 PCYT1AP49585 367 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 AQP4P55087 323 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 ADARB1P78563 741 aaKnown RBP13.91□□□□□ -0.18
USP40-206ENST00000443711 KEAP1Q14145 624 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 CRMP1Q14194 572 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 P2RY6Q15077 328 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 DNM1P34Q6PK57 102 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 SLC25A47Q6Q0C1 308 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 ZNF474Q6S9Z5 364 aaPredicted RBP13.91□□□□□ -0.18
USP40-206ENST00000443711 IZUMO2Q6UXV1 221 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 LINGO2Q7L985 606 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 GABRG1Q8N1C3 465 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 DEPDC4Q8N2C3 294 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 TCEANCQ8N8B7 351 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 CYB561A3Q8NBI2 242 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 ALKBH3Q96Q83 286 aaPredicted RBP13.91□□□□□ -0.18
USP40-206ENST00000443711 ADI1Q9BV57 179 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 RBM24Q9BX46 236 aaKnown RBP13.91□□□□□ -0.18
USP40-206ENST00000443711 NUAK2Q9H093 628 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 SYT4Q9H2B2 425 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 FN3KQ9H479 309 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 IMPAD1Q9NX62 359 aa13.91□□□□□ -0.18
USP40-206ENST00000443711 PRR23D1E9PI22 279 aaPredicted RBP13.9□□□□□ -0.18
USP40-206ENST00000443711 SLC16A7O60669 478 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 KHDRBS3O75525 346 aaKnown RBP13.9□□□□□ -0.18
USP40-206ENST00000443711 CLDN14O95500 239 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 PRR23D2P0DMB1 279 aaPredicted RBP13.9□□□□□ -0.18
USP40-206ENST00000443711 CAPGP40121 348 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 HSPA13P48723 471 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 ZNF84P51523 738 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 SLC25A1P53007 311 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 EFNB1P98172 346 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 TGFBR3Q03167 851 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 FMODQ06828 376 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 CEACAM16Q2WEN9 425 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 FBXL19-AS1Q494R0 122 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 C10orf128Q5T292 105 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 OR8J1Q8NGP2 316 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 OR2T4Q8NH00 348 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 FAM81AQ8TBF8 368 aa13.9□□□□□ -0.18
USP40-206ENST00000443711 TRUB1Q8WWH5 349 aaKnown RBP13.9□□□□□ -0.18
USP40-206ENST00000443711 OTULINQ96BN8 352 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms