RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 KCND3Q9UK17 655 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 HLA-BQ31612 363 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 PLPP6Q8IY26 295 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 DNAJC5GQ8N7S2 189 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 OR4K13Q8NH42 304 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 POLDIP2Q9Y2S7 368 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 TRPM6Q9BX84 2022 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ARFGEF3Q5TH69 2177 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 TMEM189-UBE2V1I3L0A0 370 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 DMWDQ09019 674 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ABHD4Q8TB40 342 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 GPR31O00270 319 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 MT-ND4P03905 459 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 CXCL9Q07325 125 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 ZNF100Q8IYN0 542 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 SLC24A4Q8NFF2 622 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 RASD2Q96D21 266 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 FGF20Q9NP95 211 aaPredicted RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 CEBPZOSA8MTT3 80 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 CTDSPLO15194 276 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 SPINT2O43291 252 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 CD99P14209 185 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ENPP1P22413 925 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 UBE2G1P62253 170 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 TMEM97Q5BJF2 176 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 C17orf107Q6ZR85 190 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 OR2AE1Q8NHA4 323 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 DMRT3Q9NQL9 472 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 LINC00862A6NCI5 91 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 NCBP2LA6PVI3 153 aaKnown RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 MAMDC4Q6UXC1 1216 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 TFAP2EQ6VUC0 442 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 PP6455Q8WZ26 134 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 NSUN5Q96P11 429 aaKnown RBP6.66□□□□□ -1.34
VPS53-204ENST00000437048 ATF6BQ99941 703 aa6.66□□□□□ -1.34
VPS53-204ENST00000437048 ACOT8O14734 319 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 PREPP48147 710 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 TRIM61Q5EBN2 209 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 SSX8Q7RTT4 187 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 DCXRQ7Z4W1 244 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 CCDC190Q86UF4 302 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 OR2G3Q8NGZ4 309 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 ABHD14BQ96IU4 210 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS53-204ENST00000437048 PITPNC1Q9UKF7 332 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 TCRBV7S3A2A0A539 114 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 RAB27BO00194 218 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 CXCL14O95715 111 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 SDC1P18827 310 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 GTF3C1Q12789 2109 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 UGCGQ16739 394 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 MIDNQ504T8 468 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 KLHDC8AQ8IYD2 350 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 HGDQ93099 445 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 RGPD1P0DJD0 1748 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 GVINP1Q7Z2Y8 2422 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 HSBP1O75506 76 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 HAPLN1P10915 354 aaPredicted RBP6.65□□□□□ -1.34
VPS53-204ENST00000437048 ZNF93P35789 620 aaPredicted RBP6.65□□□□□ -1.34
VPS53-204ENST00000437048 NPBWR1P48145 328 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 LIMK1P53667 647 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 EEF1A2Q05639 463 aaKnown RBP6.65□□□□□ -1.34
VPS53-204ENST00000437048 SHHQ15465 462 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 NCR3LG1Q68D85 454 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 LETMD1Q6P1Q0 360 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 TRILQ7L0X0 811 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 TRAPPC6BQ86SZ2 158 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 CAPNS2Q96L46 248 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 SMIM7Q9BQ49 75 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 RIPK3Q9Y572 518 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 GCGP01275 180 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 FUT1P19526 365 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 RABIFP47224 123 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 NAAAQ02083 359 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 CREB3L4Q8TEY5 395 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 TMPRSS13Q9BYE2 586 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 ELOVL3Q9HB03 270 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 BCL2L10Q9HD36 194 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 LRIT1Q9P2V4 623 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 A0A1B0GV72 72 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 IGLON5A6NGN9 336 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 DNPH1O43598 174 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 CAPNS1P04632 268 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 SYN1P17600 705 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 NAT1P18440 290 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 C21orf33P30042 268 aaPredicted RBP6.65□□□□□ -1.34
VPS53-204ENST00000437048 NRLP54845 237 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 NDUFA6P56556 154 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 POMZP3Q6PJE2 187 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 Q8IYB0 196 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 FAAP24Q9BTP7 215 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 CACNG4Q9UBN1 327 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 MPPED1O15442 326 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 FBLP22087 321 aaKnown RBP6.65□□□□□ -1.34
VPS53-204ENST00000437048 CDKN1CP49918 316 aaPredicted RBP6.65□□□□□ -1.34
VPS53-204ENST00000437048 Q6ZTK2 550 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 FCRLAQ7L513 359 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 LGALS14Q8TCE9 139 aa6.65□□□□□ -1.34
VPS53-204ENST00000437048 TOMM40LQ969M1 308 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms