RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 COA3Q9Y2R0 106 aaPredicted RBP7.57□□□□□ -1.2
CD44-208ENST00000428726 SPTA1P02549 2419 aa7.57□□□□□ -1.2
CD44-208ENST00000428726 ZNF593O00488 134 aaPredicted RBP7.56□□□□□ -1.2
CD44-208ENST00000428726 SUSD5O60279 629 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 OR7A10O76100 309 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 ALX3O95076 343 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 CRYZL1O95825 349 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 PNPP00491 289 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 CALCBP10092 127 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 F8A1P23610 371 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 TALDO1P37837 337 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 CAPZA2P47755 286 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 OR3A3P47888 321 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 GBX2P52951 348 aaPredicted RBP7.56□□□□□ -1.2
CD44-208ENST00000428726 IGLV3-21P80748 117 aaPredicted RBP7.56□□□□□ -1.2
CD44-208ENST00000428726 POU3F1Q03052 451 aaPredicted RBP7.56□□□□□ -1.2
CD44-208ENST00000428726 FUT7Q11130 342 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 SKP2Q13309 424 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 SMAD4Q13485 552 aaKnown RBP7.56□□□□□ -1.2
CD44-208ENST00000428726 ZNF74Q16587 644 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 HLA-BQ31612 363 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 KLHL26Q53HC5 615 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 PXDC1Q5TGL8 231 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 LAMTOR1Q6IAA8 161 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 PAPD4Q6PIY7 484 aaKnown RBP7.56□□□□□ -1.2
CD44-208ENST00000428726 COMMD2Q86X83 199 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 DEFB123Q8N688 67 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 RGP1Q92546 391 aaPredicted RBP7.56□□□□□ -1.2
CD44-208ENST00000428726 GNRHR2Q96P88 292 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 OR10A4Q9H209 315 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 NARFLQ9H6Q4 476 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 RXFP3Q9NSD7 469 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 ING3Q9NXR8 418 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 ADAM30Q9UKF2 790 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 SPATA2Q9UM82 520 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 FREM1Q5H8C1 2179 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 MED13Q9UHV7 2174 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 TRABD2BA6NFA1 517 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 GMDSO60547 372 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 NOS1APO75052 506 aaPredicted RBP7.56□□□□□ -1.2
CD44-208ENST00000428726 MTNR1BP49286 362 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 ZNF81P51508 661 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 EFNB2P52799 333 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 P2RX3P56373 397 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 TAS2R43P59537 309 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 ARPC4P59998 168 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 SPOCK1Q08629 439 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 MFAP5Q13361 173 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 TRAM1Q15629 374 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 ARHGAP11AQ6P4F7 1023 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 CHMP1BQ7LBR1 199 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 SLC29A4Q7RTT9 530 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 SIAH3Q8IW03 269 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 CMIPQ8IY22 773 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 OR51D1Q8NGF3 324 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 ACOT12Q8WYK0 555 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 WWTR1Q9GZV5 400 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 LIN7BQ9HAP6 207 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 RBFOX1Q9NWB1 397 aaKnown RBP7.56□□□□□ -1.2
CD44-208ENST00000428726 HAO2Q9NYQ3 351 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 FRRS1LQ9P0K9 344 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 ZZEF1O43149 2961 aa7.56□□□□□ -1.2
CD44-208ENST00000428726 XKRYO14609 159 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 SSNA1O43805 119 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 IGHV3-9P01782 118 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 IFNGR1P15260 489 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 GPR143P51810 404 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 HSD17B7P56937 341 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 ACTC1P68032 377 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 ACTA1P68133 377 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 ADAM8P78325 824 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 POU4F2Q12837 409 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 SHBQ15464 509 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 HSD17B12Q53GQ0 312 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 LINC00114Q6XXX2 140 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 PLXDC1Q8IUK5 500 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 CMTM4Q8IZR5 234 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 OR51A2Q8NGJ7 313 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 ZNF431Q8TF32 576 aaPredicted RBP7.55□□□□□ -1.2
CD44-208ENST00000428726 TMEM106AQ96A25 262 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 LRFN5Q96NI6 719 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 CRB3Q9BUF7 120 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.55□□□□□ -1.2
CD44-208ENST00000428726 MED28Q9H204 178 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 UCK1Q9HA47 277 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 ELOVL3Q9HB03 270 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 EIF3KQ9UBQ5 218 aaKnown RBP7.55□□□□□ -1.2
CD44-208ENST00000428726 MRM2Q9UI43 246 aaKnown RBP7.55□□□□□ -1.2
CD44-208ENST00000428726 FBXL2Q9UKC9 423 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 NPFFR2Q9Y5X5 522 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 R4GN57 208 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 EFCAB7A8K855 629 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 NPIPB9F8W1W9 429 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 FLRT2O43155 660 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 PLPP2O43688 288 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 SLC19A2O60779 497 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 SIX6O95475 246 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 SLC2A5P22732 501 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 GZMKP49863 264 aa7.55□□□□□ -1.2
CD44-208ENST00000428726 NTRK2Q16620 822 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms