RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CDK9P50750 372 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 CLDN8P56748 225 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 CRYZQ08257 329 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 C17orf67Q0P5P2 114 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 PDE7AQ13946 482 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 GANABQ14697 944 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 FAM98BQ52LJ0 330 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 CT45A2Q5DJT8 189 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 METTL21CQ5VZV1 264 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 AWAT2Q6E213 333 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 ANKRD26P1Q6NSI1 321 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 PLCZ1Q86YW0 608 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 MISPQ8IVT2 679 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 SFXN5Q8TD22 340 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 CIDECQ96AQ7 238 aaPredicted RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 EFHD2Q96C19 240 aaPredicted RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 PPP1R36Q96LQ0 422 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 ANKRD27Q96NW4 1050 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 SORT1Q99523 831 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 LMF2Q9BU23 707 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 HOXD1Q9GZZ0 328 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 KCNJ16Q9NPI9 418 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 FAM120CQ9NX05 1096 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 WIF1Q9Y5W5 379 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 GTF3C1Q12789 2109 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 MYO7BQ6PIF6 2116 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 A0A0G2JMM0 328 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 A0A1W2PPB8 328 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 A0A1W2PRS3 328 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 PINLYPA6NC86 204 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 CD8B2A6NJW9 211 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 KIR3DP1A8MWS1 328 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 J3QR06 171 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 TSPAN2O60636 221 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 UGT2B11O75310 529 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 AK1P00568 194 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 COX6B1P14854 86 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 CPT2P23786 658 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 HTR1EP28566 365 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 SRD5A2P31213 254 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 MC5RP33032 325 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 S100A3P33764 101 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 EVI2BP34910 448 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 FRKP42685 505 aaPredicted RBP5.61□□□□□ -1.51
USP40-202ENST00000409945 CCT3P49368 545 aaKnown RBP5.61□□□□□ -1.51
USP40-202ENST00000409945 DSCR4P56555 118 aaPredicted RBP5.61□□□□□ -1.51
USP40-202ENST00000409945 STX1BP61266 288 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 HPCAP84074 193 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 MYBPHQ13203 477 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 C1orf185Q5T7R7 199 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 ATAD3BQ5T9A4 648 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 KCTD18Q6PI47 426 aaPredicted RBP5.61□□□□□ -1.51
USP40-202ENST00000409945 KRT74Q7RTS7 529 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 SATL1Q86VE3 508 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 OR5M9Q8NGP3 310 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 GOT1L1Q8NHS2 421 aaPredicted RBP5.61□□□□□ -1.51
USP40-202ENST00000409945 SLC38A5Q8WUX1 472 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 HGDQ93099 445 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 ABTB1Q969K4 478 aaPredicted RBP5.61□□□□□ -1.51
USP40-202ENST00000409945 TAAR8Q969N4 342 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 CMTM5Q96DZ9 223 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 RMND5BQ96G75 393 aaPredicted RBP5.61□□□□□ -1.51
USP40-202ENST00000409945 STACQ99469 402 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 CCDC106Q9BWC9 280 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 YY1AP1Q9H869 796 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 MEAF6Q9HAF1 191 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 RNPEPL1Q9HAU8 725 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 CACYBPQ9HB71 228 aaKnown RBP5.61□□□□□ -1.51
USP40-202ENST00000409945 EXD2Q9NVH0 621 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 GIN1Q9NXP7 522 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 TAS2R1Q9NYW7 299 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 ARMCX1Q9P291 453 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 MRPS18CQ9Y3D5 142 aaKnown RBP5.61□□□□□ -1.51
USP40-202ENST00000409945 COL12A1Q99715 3063 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 RELNP78509 3460 aa5.61□□□□□ -1.51
USP40-202ENST00000409945 GOLGA8QA0A0J9YX86 632 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 PRSS51A0A1B0GVH4 220 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 GOLGA8OA6NCC3 632 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 GOLGA8NF8WBI6 632 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 SLC22A2O15244 555 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 SPINT2O43291 252 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 SCO2O43819 266 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 ACAA1P09110 424 aaPredicted RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 IDO1P14902 403 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 ITGA2P17301 1181 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 DPP4P27487 766 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 PRDX6P30041 224 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 CHI3L1P36222 383 aaPredicted RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 ZFP36L2P47974 494 aaKnown RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 ISL1P61371 349 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 EEF1A1P68104 462 aaKnown RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 EEF1A1P5Q5VTE0 462 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 C3P1Q6ZMU1 363 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 CAMKMTQ7Z624 323 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 LACC1Q8IV20 430 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 CLIP4Q8N3C7 705 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 ZNF114Q8NC26 417 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 FAM83FQ8NEG4 500 aaPredicted RBP5.6□□□□□ -1.51
USP40-202ENST00000409945 OR7A2PQ8NGA2 310 aa5.6□□□□□ -1.51
USP40-202ENST00000409945 OR8J2Q8NGG1 315 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms