RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TMED7Q9Y3B3 224 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 TACSTD2P09758 323 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 PTH2RP49190 550 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 PLA1AQ53H76 456 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 TPRA1Q86W33 373 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 DUSP18Q8NEJ0 188 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 OR56B4Q8NH76 319 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 FCAMRQ8WWV6 532 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 DOCK7Q96N67 2140 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 DDOQ99489 341 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 NPAP1Q9NZP6 1156 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 KLHL9Q9P2J3 617 aa12.11□□□□□ -0.47
VPS54-203ENST00000409558 TEX51A0A1B0GUA7 166 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 A0A1W2PQ72 361 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 NPIPB9F8W1W9 429 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 PNPP00491 289 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 HLA-DMAP28067 261 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 PPICP45877 212 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 CCR5P51681 352 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 WDR38Q5JTN6 314 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 NHLRC1Q6VVB1 395 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 CHST4Q8NCG5 386 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 OR51A2Q8NGJ7 313 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 OR2G2Q8NGZ5 317 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 STT3BQ8TCJ2 826 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 KCTD12Q96CX2 325 aaKnown RBP12.1□□□□□ -0.47
VPS54-203ENST00000409558 C20orf85Q9H1P6 137 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 PRDM9Q9NQV7 894 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 MGAT4CQ9UBM8 478 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 IGHV1OR21-1A0A087WYE8 117 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 LOC101059948A0A1B0GTJ6 334 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 FITM1A5D6W6 292 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 ALDOBP05062 364 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 CFL1P23528 166 aaKnown RBP12.1□□□□□ -0.47
VPS54-203ENST00000409558 EBPQ15125 230 aaKnown RBP12.1□□□□□ -0.47
VPS54-203ENST00000409558 PXKQ7Z7A4 578 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 TDHQ8IZJ6 230 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 SLC25A45Q8N413 288 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 FTMTQ8N4E7 242 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 NPRL2Q8WTW4 380 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 SLC39A7Q92504 469 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 SLC25A38Q96DW6 304 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 TTYH1Q9H313 450 aaPredicted RBP12.1□□□□□ -0.47
VPS54-203ENST00000409558 SVILO95425 2214 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 CEP250Q9BV73 2442 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 AHSA1O95433 338 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 PNMTP11086 282 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 IFNGR1P15260 489 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 TSPAN5P62079 268 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 ATXN7L3Q14CW9 347 aaPredicted RBP12.1□□□□□ -0.47
VPS54-203ENST00000409558 LINC00303Q3SY05 128 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 ZNF782Q6ZMW2 699 aaPredicted RBP12.1□□□□□ -0.47
VPS54-203ENST00000409558 DAZLQ92904 295 aaKnown RBP12.1□□□□□ -0.47
VPS54-203ENST00000409558 CREB3L1Q96BA8 519 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 CIB4A0PJX0 185 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 M0QYG6 137 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 DUX1O43812 170 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 KRT33AO76009 404 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 DDAH2O95865 285 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 GTF2F2P13984 249 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 ART1P52961 327 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 BDH1Q02338 343 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 MFGE8Q08431 387 aaPredicted RBP12.1□□□□□ -0.47
VPS54-203ENST00000409558 Q7L0L9 218 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.1□□□□□ -0.47
VPS54-203ENST00000409558 HRASLSQ9HDD0 168 aa12.1□□□□□ -0.47
VPS54-203ENST00000409558 RALGAPA1Q6GYQ0 2036 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 OGG1O15527 345 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 HEXBP07686 556 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 FAM157BP0CG42 384 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 ANXA3P12429 323 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 ZMYND11Q15326 602 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 Q499Y3 187 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 C17orf107Q6ZR85 190 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 GRAMD2AQ8IUY3 354 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 ZNF721Q8TF20 911 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 CYYR1Q96J86 154 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 LMO7DNF2Z398 122 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 ZNF217O75362 1048 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 PIAS2O75928 621 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 IL33O95760 270 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 CLPSP04118 112 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 FASLGP48023 281 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 PITPNAQ00169 270 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 CAMK2DQ13557 499 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.09□□□□□ -0.47
VPS54-203ENST00000409558 LIN54Q6MZP7 749 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 FAM219AQ8IW50 185 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 ACBD4Q8NC06 268 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 CCDC74AQ96AQ1 378 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 SLC46A1Q96NT5 459 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 WWTR1Q9GZV5 400 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 NOX3Q9HBY0 568 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 A0A1W2PPL8 197 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 BCAT2O15382 392 aaPredicted RBP12.09□□□□□ -0.47
VPS54-203ENST00000409558 ZNHIT1O43257 154 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 MBTPS2O43462 519 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 POU3F4P49335 361 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 BCL2A1Q16548 175 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 YIF1BQ5BJH7 314 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms