RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 PNPP00491 289 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 LUMP51884 338 aaPredicted RBP19.02■□□□□ 0.64
CTCF-202ENST00000401394 LGALS3BPQ08380 585 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 DMWDQ09019 674 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 MOGAT2Q3SYC2 334 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 SCGB2B2Q4G0G5 96 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 ZNF627Q7L945 461 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 CDH26Q8IXH8 852 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 PRR22Q8IZ63 422 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 OR5M9Q8NGP3 310 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 MYADMQ96S97 322 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 ATG5Q9H1Y0 275 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 OR6C65A6NJZ3 312 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 OR4C45A6NMZ5 311 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 GPRIN2O60269 458 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 CSRP1P21291 193 aaKnown RBP19.02■□□□□ 0.64
CTCF-202ENST00000401394 KIR3DL2P43630 455 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 EPHA4P54764 986 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 JAZF1Q86VZ6 243 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 CSNK1A1LQ8N752 337 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 OR1J2Q8NGS2 313 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 LAMP5Q9UJQ1 280 aa19.02■□□□□ 0.64
CTCF-202ENST00000401394 FITM1A5D6W6 292 aa19.02■□□□□ 0.63
CTCF-202ENST00000401394 D6RAR5 112 aa19.02■□□□□ 0.63
CTCF-202ENST00000401394 HPP00738 406 aa19.02■□□□□ 0.63
CTCF-202ENST00000401394 PM20D2Q8IYS1 436 aa19.02■□□□□ 0.63
CTCF-202ENST00000401394 TSEN15Q8WW01 171 aaKnown RBP19.02■□□□□ 0.63
CTCF-202ENST00000401394 PCNX3Q9H6A9 2034 aa19.02■□□□□ 0.63
CTCF-202ENST00000401394 ERVK-19Q9WJR5 959 aa19.02■□□□□ 0.63
CTCF-202ENST00000401394 ELOA3DA6NLF2 546 aaPredicted RBP19.01■□□□□ 0.63
CTCF-202ENST00000401394 XRCC3O43542 346 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 COL9A1P20849 921 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 MPGP29372 298 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 ELOA3BQ3SY89 546 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 MESTQ5EB52 335 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 WDR38Q5JTN6 314 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 CD163Q86VB7 1156 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 ELOA3Q8NG57 546 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 OR51A2Q8NGJ7 313 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 LDAHQ9H6V9 325 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 HRASLS2Q9NWW9 162 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 MED12Q93074 2177 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 A0A087WV62 115 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 SNRPGP15A8MWD9 76 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 LMX1BO60663 402 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 IL5P05113 134 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 RAB40ALP0C0E4 278 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 CT45A8P0DMV1 189 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 CT45A9P0DMV2 189 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 C5AR1P21730 350 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 FCARP24071 287 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 EGR4Q05215 589 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 ENPP2Q13822 863 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 CT45A2Q5DJT8 189 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 ZNF546Q86UE3 836 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 BPIFCQ8NFQ6 507 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 RAB40AQ8WXH6 277 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 MED11Q9P086 117 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 FREM3P0C091 2139 aa19.01■□□□□ 0.63
CTCF-202ENST00000401394 DCDC2BA2VCK2 349 aa19■□□□□ 0.63
CTCF-202ENST00000401394 CDC14CA4D256 554 aa19■□□□□ 0.63
CTCF-202ENST00000401394 FAM25EA8MYX2 175 aa19■□□□□ 0.63
CTCF-202ENST00000401394 HLA-DQA2P01906 255 aa19■□□□□ 0.63
CTCF-202ENST00000401394 FAM220AQ7Z4H9 259 aa19■□□□□ 0.63
CTCF-202ENST00000401394 CAMKVQ8NCB2 501 aa19■□□□□ 0.63
CTCF-202ENST00000401394 LPAR4Q99677 370 aa19■□□□□ 0.63
CTCF-202ENST00000401394 NPAS1Q99742 590 aa19■□□□□ 0.63
CTCF-202ENST00000401394 EMC3Q9P0I2 261 aa19■□□□□ 0.63
CTCF-202ENST00000401394 TAF13Q15543 124 aa19■□□□□ 0.63
CTCF-202ENST00000401394 STK11Q15831 433 aa19■□□□□ 0.63
CTCF-202ENST00000401394 ALG10Q5BKT4 473 aa19■□□□□ 0.63
CTCF-202ENST00000401394 AVL9Q8NBF6 648 aa19■□□□□ 0.63
CTCF-202ENST00000401394 SP7Q8TDD2 431 aaPredicted RBP19■□□□□ 0.63
CTCF-202ENST00000401394 CMBLQ96DG6 245 aa19■□□□□ 0.63
CTCF-202ENST00000401394 SLITRK2Q9H156 845 aa19■□□□□ 0.63
CTCF-202ENST00000401394 APMAPQ9HDC9 416 aa19■□□□□ 0.63
CTCF-202ENST00000401394 C14orf105Q9NVL8 296 aa19■□□□□ 0.63
CTCF-202ENST00000401394 C1orf61Q13536 156 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 UNQ6126/PRO20091Q6UXV3 157 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 RHOUQ7L0Q8 258 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 FAM122BQ7Z309 247 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 HDDC2Q7Z4H3 204 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 SAMD14Q8IZD0 417 aaPredicted RBP18.99■□□□□ 0.63
CTCF-202ENST00000401394 C16orf52Q8NHV5 167 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 VSTM2LQ96N03 204 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 ZNF578Q96N58 590 aaPredicted RBP18.99■□□□□ 0.63
CTCF-202ENST00000401394 TMPRSS13Q9BYE2 586 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 IGFLR1Q9H665 355 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 TAS2R3Q9NYW6 316 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 KRBOX1C9JBD0 128 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 GPR31O00270 319 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 IFNA16P05015 189 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 CALCBP10092 127 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 DMRTC1Q5HYR2 192 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 KDM8Q8N371 416 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 RSC1A1Q92681 617 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 RBM18Q96H35 190 aaKnown RBP18.99■□□□□ 0.63
CTCF-202ENST00000401394 TSPAN32Q96QS1 320 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 CPNE7Q9UBL6 633 aa18.99■□□□□ 0.63
CTCF-202ENST00000401394 VPS13AQ96RL7 3174 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms