RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 OR6C74A6NCV1 312 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 IFITM5A6NNB3 132 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 LCMT2O60294 686 aaKnown RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 THY1P04216 161 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 SPTBP11277 2137 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 PVRP15151 417 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 PTAFRP25105 342 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 S100PP25815 95 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 NCBP2P52298 156 aaKnown RBP eCLIP10.13□□□□□ -0.792e-6■■□□□ 13
CUX1-204ENST00000393824 PPIAP62937 165 aaKnown RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 STX4Q12846 297 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 TRIM61Q5EBN2 209 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 ALKBH2Q6NS38 261 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 JMJD6Q6NYC1 403 aaPredicted RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 UBE3DQ7Z6J8 389 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 ZNF546Q86UE3 836 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 LNX2Q8N448 690 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 THAP6Q8TBB0 222 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 SLC2A12Q8TD20 617 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 BBS4Q96RK4 519 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 OR52D1Q9H346 318 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 SRMSQ9H3Y6 488 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 RXFP3Q9NSD7 469 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 COLEC10Q9Y6Z7 277 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 TRAV14DV4A0A0A6YYC5 116 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 TMEM272A0A1B0GTI8 110 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 EFCAB7A8K855 629 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 FRS3O43559 492 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 HCRTR1O43613 425 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 S100A9P06702 114 aaKnown RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 PRG2P13727 222 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 SPI1P17947 270 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 SRMP19623 302 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 FAUP35544 74 aaKnown RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 FXYD6P3P58550 94 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 ACTC1P68032 377 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 ACTA1P68133 377 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 PRR5P85299 388 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 TGM3Q08188 693 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 CDK5R1Q15078 307 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 C4orf46Q504U0 113 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 NKAIN2Q5VXU1 208 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 SLC6A19Q695T7 634 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 RPL13AP3Q6NVV1 102 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 C3orf33Q6P1S2 294 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 FCRLAQ7L513 359 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 OR2W3Q7Z3T1 314 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 GDF7Q7Z4P5 450 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 C17orf82Q86X59 251 aaPredicted RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 SLC35F3Q8IY50 421 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 OR2L3Q8NG85 312 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 HAVCR1Q96D42 359 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 PAPOLGQ9BWT3 736 aaKnown RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 TWSG1Q9GZX9 223 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 QRSL1Q9H0R6 528 aaKnown RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 ALX4Q9H161 411 aaPredicted RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 WDR13Q9H1Z4 485 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 ARRDC1-AS1Q9H2J1 176 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 CMC2Q9NRP2 79 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 ZNF629Q9UEG4 869 aaPredicted RBP10.13□□□□□ -0.79
CUX1-204ENST00000393824 UNC13CQ8NB66 2214 aa10.13□□□□□ -0.79
CUX1-204ENST00000393824 TRBV23-1A0A0A0MS06 115 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 KIR2DS5A0A0G2JLQ3 304 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 A0A0G2JNG1 304 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 A0A1B0GWJ7 208 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 DBX1A6NMT0 343 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 TTLL8A6PVC2 850 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 KIR2DS3K7RE56 304 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 EMC8O43402 210 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 PIP5K1CO60331 668 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 CLN5O75503 358 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 OR2F2O95006 317 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 HMGN2P05204 90 aaKnown RBP10.12□□□□□ -0.79
CUX1-204ENST00000393824 ZNF806P0C7X5 589 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 FOLR2P14207 255 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 CAPZA1P52907 286 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 OR2F1Q13607 317 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 KIR2DS5Q14953 304 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 TMEM69Q5SWH9 247 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 PWWP2BQ6NUJ5 590 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 FAM122BQ7Z309 247 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 SZRD1Q7Z422 152 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 SHISA5Q8N114 240 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 OR6N1Q8NGY5 312 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 SAP25Q8TEE9 199 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 C2CD4CQ8TF44 421 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 TMEM255BQ8WV15 326 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 TNFAIP8L1Q8WVP5 186 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 SMPDL3BQ92485 455 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 ZDHHC12Q96GR4 267 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 SLC41A3Q96GZ6 507 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 GFI1Q99684 422 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 NIT2Q9NQR4 276 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 POT1Q9NUX5 634 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 PCDHB10Q9UN67 800 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 KANTRA0A1W2PQU2 76 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 ZNF879B4DU55 563 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 CD8AP01732 235 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 CTSBP07858 339 aa10.12□□□□□ -0.79
CUX1-204ENST00000393824 SLC2A5P22732 501 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms