RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 A8MVM7 634 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 LGI1O95970 557 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 EDNRAP25101 427 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 PTGES3Q15185 160 aaKnown RBP9.33□□□□□ -0.92
COL6A3-205ENST00000392004 HYAL4Q2M3T9 481 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 C3orf33Q6P1S2 294 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 BHLHE23Q8NDY6 225 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 KTI12Q96EK9 354 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-205ENST00000392004 FAM173AQ9BQD7 235 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 TMEM38AQ9H6F2 299 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 FKBP14Q9NWM8 211 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 TESQ9UGI8 421 aaKnown RBP9.33□□□□□ -0.92
COL6A3-205ENST00000392004 KLHL21Q9UJP4 597 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 TP53TG5Q9Y2B4 290 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 A0A1B0GTH9 108 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 A0A1W2PQL4 384 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-205ENST00000392004 hCG_1807616A0A1W2PRN6 198 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 B8ZZF3 427 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 ORC5O43913 435 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 H2BFMP0C1H6 154 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 M6PRP20645 277 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 PRKAR1BP31321 381 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 SDC2P34741 201 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 ST3GAL2Q16842 350 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 ESCO2Q56NI9 601 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 CORO6Q6QEF8 472 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 PAMR1Q6UXH9 720 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 RPTNQ6XPR3 784 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 SULF2Q8IWU5 870 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 POGLUT1Q8NBL1 392 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 OR52N5Q8NH56 324 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF721Q8TF20 911 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 MND1Q9BWT6 205 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 DLL3Q9NYJ7 618 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 VSX1Q9NZR4 365 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-205ENST00000392004 KCNN3Q9UGI6 736 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 CES1P1Q9UKY3 287 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 OSGIN2Q9Y236 505 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 EMC9Q9Y3B6 208 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 A6NIN4 97 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 FIGNL2A6NMB9 653 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 EFSO43281 561 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 SLC2A2P11168 524 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-205ENST00000392004 HLA-DMAP28067 261 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 PSMB10P40306 273 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 NUBP1P53384 320 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 MLC1Q15049 377 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 CRTC2Q53ET0 693 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF57Q68EA5 555 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-205ENST00000392004 WFDC8Q8IUA0 241 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 LIX1LQ8IVB5 337 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 ANKK1Q8NFD2 765 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 FLVCR1-AS1Q8TAF5 88 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 TTC9Q92623 222 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 TMEM80Q96HE8 168 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 HIST1H2AAQ96QV6 131 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 RACGAP1Q9H0H5 632 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 MYEF2Q9P2K5 600 aaKnown RBP9.32□□□□□ -0.92
COL6A3-205ENST00000392004 IGHV1-45A0A0A0MS14 117 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 A1L4Q6 167 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 OR2M5A3KFT3 312 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 DPM1O60762 260 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 IGKV1D-16P01601 117 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 SCG5P05408 212 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 FBXO45P0C2W1 286 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 PRPH2P23942 346 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 GZMKP49863 264 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 CRMP1Q14194 572 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 TATDN3Q17R31 274 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 FAM69AQ5T7M9 428 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 RNF165Q6ZSG1 346 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 SLC38A6Q8IZM9 456 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 C7orf34Q96L11 122 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 MED18Q9BUE0 208 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 SLITRK2Q9H156 845 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 WDR76Q9H967 626 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 FANCFQ9NPI8 374 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 ING4Q9UNL4 249 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 GSTK1Q9Y2Q3 226 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF337Q9Y3M9 751 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 ADAMTS9Q9P2N4 1935 aa9.32□□□□□ -0.92
COL6A3-205ENST00000392004 CDHR4A6H8M9 788 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF670-ZNF695F2Z2N8 137 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 MAGEB4O15481 346 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-205ENST00000392004 RAD51DO75771 328 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 ELAVL4P26378 380 aaKnown RBP9.31□□□□□ -0.92
COL6A3-205ENST00000392004 MYBPHQ13203 477 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 IRF3Q14653 427 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 UNQ6494/PRO21346Q6UXR6 183 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF813Q6ZN06 617 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 CREB3L2Q70SY1 520 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 TCTE3Q8IZS6 198 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 RDH10Q8IZV5 341 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF611Q8N823 705 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 DTX3Q8N9I9 347 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 FAM131CQ96AQ9 280 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 MUCL1Q96DR8 90 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 FAM71F1Q96KD3 344 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-205ENST00000392004 KLHL15Q96M94 604 aa9.31□□□□□ -0.92
COL6A3-205ENST00000392004 RPL36Q9Y3U8 105 aaKnown RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms