RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 C9orf40Q8IXQ3 194 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 ARIH2OSQ8N7S6 290 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 ZFP41Q8N8Y5 198 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 OR52H1Q8NGJ2 320 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 OR1N1Q8NGS0 311 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 OR14A16Q8NHC5 309 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 PSMF1Q92530 271 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 KATNB1Q9BVA0 655 aa12.92□□□□□ -0.34
HMGA1-203ENST00000374116 IGKV3-11P04433 115 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 CELP19835 753 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 RRADP55042 308 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 SLC37A1P57057 533 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 HSF2Q03933 536 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.91□□□□□ -0.34
HMGA1-203ENST00000374116 LINC00696Q6ZRV3 163 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 OVCH2Q7RTZ1 564 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 OAFQ86UD1 273 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 DTX3Q8N9I9 347 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 ATP6V1C2Q8NEY4 427 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 ELP5Q8TE02 316 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 GAL3ST4Q96RP7 486 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 SHARPINQ9H0F6 387 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 MED20Q9H944 212 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 ANKRD10Q9NXR5 420 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 NLKQ9UBE8 527 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 RPS6KB2Q9UBS0 482 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF175Q9Y473 711 aa12.91□□□□□ -0.34
HMGA1-203ENST00000374116 SMG1Q96Q15 3661 aaKnown RBP12.91□□□□□ -0.34
HMGA1-203ENST00000374116 TRAV27A0A087WT01 109 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 CIB4A0PJX0 185 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 TSPAN4O14817 238 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 SERPINA7P05543 415 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 PEPDP12955 493 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF3P17036 446 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 SLC6A6P31641 620 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 TGM4P49221 684 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 S100A12P80511 92 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 EXOSC2Q13868 293 aaKnown RBP12.9□□□□□ -0.34
HMGA1-203ENST00000374116 EXT1Q16394 746 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 CLVS2Q5SYC1 327 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 CD276Q5ZPR3 534 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 KLBQ86Z14 1044 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 Q8N402 240 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 LRRC17Q8N6Y2 441 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 BCORP1Q8N888 145 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 OR51A7Q8NH64 312 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 M1APQ8TC57 530 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 KISS1RQ969F8 398 aaPredicted RBP12.9□□□□□ -0.34
HMGA1-203ENST00000374116 TEAD3Q99594 435 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 ALG8Q9BVK2 526 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 TMED9Q9BVK6 235 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF552Q9H707 407 aaPredicted RBP12.9□□□□□ -0.34
HMGA1-203ENST00000374116 BABAM2Q9NXR7 383 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 COPS7AQ9UBW8 275 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 PRODH2Q9UF12 536 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 MGAT4AQ9UM21 535 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 OR10H1Q9Y4A9 318 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 DAPL1A0PJW8 107 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 TMEM200CA6NKL6 621 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 GABRPO00591 440 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 CASKO14936 926 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 LRRTM2O43300 516 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 IFNGP01579 166 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 ANXA3P12429 323 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 CAPZA2P47755 286 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 ARHGAP11AQ6P4F7 1023 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 SYT14Q8NB59 555 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 OIT3Q8WWZ8 545 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 ST8SIA4Q92187 359 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 SCMH1Q96GD3 660 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 ABHD17AQ96GS6 310 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 TNFRSF13CQ96RJ3 184 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 HCAR1Q9BXC0 346 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 DEFB126Q9BYW3 111 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 CLEC4MQ9H2X3 399 aaPredicted RBP12.9□□□□□ -0.34
HMGA1-203ENST00000374116 CDCP1Q9H5V8 836 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 SCPEP1Q9HB40 452 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 MMP25Q9NPA2 562 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 ZNF71Q9NQZ8 489 aaPredicted RBP12.9□□□□□ -0.34
HMGA1-203ENST00000374116 HAO2Q9NYQ3 351 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 PLA2G3Q9NZ20 509 aa12.9□□□□□ -0.34
HMGA1-203ENST00000374116 A0A1B0GVI7 797 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 SERINC4A6NH21 518 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 ZNF354AO60765 605 aaPredicted RBP12.89□□□□□ -0.35
HMGA1-203ENST00000374116 TSC22D2O75157 780 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 PPP1R3DO95685 299 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 CSTAP01040 98 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 NGFRP08138 427 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 CD53P19397 219 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 SLC2A5P22732 501 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 APEX1P27695 318 aaKnown RBP12.89□□□□□ -0.35
HMGA1-203ENST00000374116 SLC6A1P30531 599 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 RAB14P61106 215 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 RPS7P62081 194 aaKnown RBP12.89□□□□□ -0.35
HMGA1-203ENST00000374116 RNF4P78317 190 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 CRYZQ08257 329 aaKnown RBP12.89□□□□□ -0.35
HMGA1-203ENST00000374116 DBPQ10586 325 aaPredicted RBP12.89□□□□□ -0.35
HMGA1-203ENST00000374116 LY6DQ14210 128 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 POU4F3Q15319 338 aa12.89□□□□□ -0.35
HMGA1-203ENST00000374116 FCN2Q15485 313 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms